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The map label for this gene is ydcO [H]

Identifier: 16764950

GI number: 16764950

Start: 1696306

End: 1697484

Strand: Direct

Name: ydcO [H]

Synonym: STM1606

Alternate gene names: 16764950

Gene position: 1696306-1697484 (Clockwise)

Preceding gene: 16764947

Following gene: 16764954

Centisome position: 34.92

GC content: 57.85

Gene sequence:

>1179_bases
ATGCGTCTGTTATCACTGCCGTTACCTACTGTATTATCTGGTCTGGTCGCCGTTCTGGTCGGCTATGCGAGTTCCGCCGC
CATTATCTGGCAGGCGGCGCTTGCCGCTGGCGCAACACCCGCAGAGATCGCCGGCTGGATGACCGCCCTCGGTATAGCCA
TGGGCATAAGCACACTAACGTTAACCTTGTGGTATCGTGCGCCGGTTTTAACCGCCTGGTCAACGCCTGGCGCCGCTCTG
TTGGTAACAGGGCTTCAGGGATTATCGTTGCCAGACGCCGTGGGCATATTCATTGTCGCCAATGCCCTGATTGTGCTGTG
CGGCGTCACGGGATTGTTTGCGCGTTTGATGCGGATAATCCCCCATTCTCTTGCCGCCGCAATGCTGGCGGGAATACTGC
TACGCTTCGGCCTGCAGGCGTTCGGGACGCTCAACGGAGAGTTTGTCATGTGCGGCGGTATGCTATTGGCGTGGCTACTC
TTTAAAGTATTCGCGCCCCGCTATGCCGTTATTGCTGCCATGGTAATGGGAATAACGGTGGCGCTCATCCAGGGTAAGGT
GGCGATGAGCGGTATTCATTTCGCGCCGGTGTGGCCCACCTTCGTTCCCCCCCACTTTTCATTCGCTCAAAGCCTGAGCG
TCGCGGTACCGCTCTTCCTGGTGACGATGGCATCGCAAAACGCCCCCGGCGTCGCCACAATGAAGGCGTCTGGCTATCAG
CTTCCTGTCTCTCCGTTAATGATTTTTACCGGGTTGCTGGCGCTGCTGCTTTCGCCATTTGGCGTTTATTCTATCTGCAT
TGCCGCCATTACAGCCGCCATTTGTCAAAGCCCGGACGCGCACCCCGATCCAACGCGTCGCTGGTTAGCGGCCGCCGCCG
CAGGCGTTTTTTATTTACTTGCCGGGTGGTTTGGCGGTTCGATAACCGCGCTGATGGTCGCCCTGCCGGTTAGCTGGGTG
CAAATGCTGGCTGGTCTGGCACTGTTAAGTACGATTAGCGGTAGCCTGTATCAGGCGCTTACTCACGAAAGTGAGCGTGA
CGCGGCAGTTATCGCATTTCTCGTCACCGCCAGCGGGCTAACGCTGATGGGCATCGGATCGGCATTCTGGGGGTTGATCG
CTGGCGGAATAGGCTACGCAGTATTAACGAGAACGCGCCGCCCATCGTTGTCTGGCTGA

Upstream 100 bases:

>100_bases
GGTTATCCATTTTCCCCCCTGTAAGGCCATAGCGTATCACTTGTACGCTATAACGCACAATGCTACATTGACTGACCGTT
ATAACGCACAAGAGGCGATC

Downstream 100 bases:

>100_bases
TGGTGGCCGCTAATCTGCCGGGGTTTGCGCCATCTTGCGATGGCGCCGCAGAATTATTTTTTATTAACGTCAAACATAGA
GGTATCCGTCGCCATATCAT

Product: benzoate membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAAL
LVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL
FKVFAPRYAVIAAMVMGITVALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFLVTMASQNAPGVATMKASGYQ
LPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLLAGWFGGSITALMVALPVSWV
QMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAVLTRTRRPSLSG

Sequences:

>Translated_392_residues
MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAAL
LVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL
FKVFAPRYAVIAAMVMGITVALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFLVTMASQNAPGVATMKASGYQ
LPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLLAGWFGGSITALMVALPVSWV
QMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAVLTRTRRPSLSG
>Mature_392_residues
MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAAL
LVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL
FKVFAPRYAVIAAMVMGITVALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFLVTMASQNAPGVATMKASGYQ
LPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLLAGWFGGSITALMVALPVSWV
QMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAVLTRTRRPSLSG

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=390, Percent_Identity=75.3846153846154, Blast_Score=581, Evalue=1e-167,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40573; Mature: 40573

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLT
CCEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRII
HHHHHHCCEEEECCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLLFKVFAPRYAVIAAMVMGITV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFLVTMASQNAPGVATMKASGYQ
HHHHCHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
LPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLL
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
AGWFGGSITALMVALPVSWVQMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGL
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
TLMGIGSAFWGLIAGGIGYAVLTRTRRPSLSG
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIAGWMTALGIAMGISTLT
CCEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANALIVLCGVTGLFARLMRII
HHHHHHCCEEEECCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLLFKVFAPRYAVIAAMVMGITV
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFLVTMASQNAPGVATMKASGYQ
HHHHCHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
LPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLAAAAAGVFYLL
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
AGWFGGSITALMVALPVSWVQMLAGLALLSTISGSLYQALTHESERDAAVIAFLVTASGL
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
TLMGIGSAFWGLIAGGIGYAVLTRTRRPSLSG
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]