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The map label for this gene is ydcN [H]

Identifier: 16764949

GI number: 16764949

Start: 1695679

End: 1696215

Strand: Reverse

Name: ydcN [H]

Synonym: STM1605

Alternate gene names: 16764949

Gene position: 1696215-1695679 (Counterclockwise)

Preceding gene: 16764951

Following gene: 16764948

Centisome position: 34.92

GC content: 52.89

Gene sequence:

>537_bases
ATGGATAACCTGACACACTATCTGGCGACCACGTTAAGAACGTTACGCCATCAGCGAGGCTGGAGTTTATCGCGTCTGGC
GGAGATCTCCGGCGTCTCAAAAGCCATGTTGGGGCAGATAGAGCGTAATGAATCCAGTCCGACAGTCGCAACGCTGTGGA
AAATTGCGACGGGCCTGAACGTTCCATTCTCAGTGTTTATTTCGCCGCCGCAGGCCGAATTTCCTCCGACCTTCGATCCC
CAGCAGCAAGCGATGGTAATCACACCGTTGTTTCCATGGGATCCTGAACTCTGTTTTGACTATTTTTCCCTATTGCTGGC
GCCTGGCACGGTCAGCGAATCAACGCCGCATAAAGCCGGCGTTATCGAACATGTGGTGGTGATTCAGGGTCGGCTGGACA
TGTGTACTGGTGGGGTATGGCAAACCATAGACGCCGGTAAAGGTTTGCGTTTTGCCGGCGATACGGCGCATACCTATCGC
AACAGCAGTGACCAGACGGTTCATTTTCACTCGCTGATCCATTACCCACGTGATTAA

Upstream 100 bases:

>100_bases
ACAGACGCATGATCGCCTCTTGTGCGTTATAACGGTCAGTCAATGTAGCATTGTGCGTTATAGCGTACAAGTGATACGCT
ATGGCCTTACAGGGGGGAAA

Downstream 100 bases:

>100_bases
GCGGGAAAACTATTTCGTTAGTTTGCGCTTCTGACTACAATAGCCGCCATTTCGCTTCTATTGGATAAGAACGACTGTAT
GCGCCAGCAACCTCACTATC

Product: repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFISPPQAEFPPTFDP
QQQAMVITPLFPWDPELCFDYFSLLLAPGTVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR
NSSDQTVHFHSLIHYPRD

Sequences:

>Translated_178_residues
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFISPPQAEFPPTFDP
QQQAMVITPLFPWDPELCFDYFSLLLAPGTVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR
NSSDQTVHFHSLIHYPRD
>Mature_178_residues
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFISPPQAEFPPTFDP
QQQAMVITPLFPWDPELCFDYFSLLLAPGTVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR
NSSDQTVHFHSLIHYPRD

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=177, Percent_Identity=72.8813559322034, Blast_Score=285, Evalue=1e-78,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 19805; Mature: 19805

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLN
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGTVSESTPHKAG
CCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
VIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYRNSSDQTVHFHSLIHYPRD
HHHEEEEECCCCCHHCCCCCEECCCCCCCEECCCCHHHHCCCCCCEEEEHHHHCCCCC
>Mature Secondary Structure
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLN
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
VPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYFSLLLAPGTVSESTPHKAG
CCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
VIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYRNSSDQTVHFHSLIHYPRD
HHHEEEEECCCCCHHCCCCCEECCCCCCCEECCCCHHHHCCCCCCEEEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]