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The map label for this gene is ydcP [H]

Identifier: 16764948

GI number: 16764948

Start: 1693636

End: 1695600

Strand: Reverse

Name: ydcP [H]

Synonym: STM1604

Alternate gene names: 16764948

Gene position: 1695600-1693636 (Counterclockwise)

Preceding gene: 16764949

Following gene: 16764945

Centisome position: 34.91

GC content: 52.57

Gene sequence:

>1965_bases
ATGCGCCAGCAACCTCACTATCTCGAATTGTTAAGTCCGGCCCGTGACGCCGCAATTGCTCGCGAAGCGATTTTGCATGG
CGCAGATGCCGTCTACATCGGCGGACCCGGTTTTGGCGCACGTCATAACGCCAGTAACAGTCTGCGCGATATCGCCGATC
TGGTTCCGTTTGCTCACCGTTACGGCGCCAGGATTTTTGTCACGCTGAATACTATTCTGCATGATGATGAGCTGGAGCCC
GCGCAGCGGTTAATCACCGATTTGTACAACACCGGGGTGGATGCGCTGATTGTGCAGGATATGGGCATTCTGGAACTGGA
TATCCCGCCGATTGAGCTTCACGCCAGTACACAGTGTGATATTCGCAGCGTGGAAAAAGCGAAGTTTCTTGCCGATGTCG
GTTTTTCACAGATTGTACTGGCGCGCGAACTTAATTTGAGTCAGATAGCGGCTATTCATCAGGCTACTGACGCCACAATT
GAGTTCTTCATTCATGGCGCGCTGTGTGTCGCTTATTCTGGGCAGTGTTATATCTCTCATGCGCAAACCGGGCGCAGCGC
CAATCGGGGCGACTGTTCGCAGGCCTGTCGTTTACCGTATACGTTAAAAGACGATCAGGGGCGGGTGGTCTCTTACGAAA
AACATTTGCTATCGATGAAAGATAACGACCAAACGGCTAACCTCGGCGCGTTGATCGATGCAGGCGTACGTTCCTTCAAG
ATTGAAGGGCGCTATAAAGACATGAGCTATGTCAAAAACATCACCGCGCATTATCGTCAGATGCTGGACGCGATTATCGA
GCAACGTGGCGATCTGGCGCGTGCGTCGGTTGGTCGGACCGAACACTTTTTTGTTCCCTCCACGGAGAAAACCTTCCATC
GCGGCAGCACCGACTATTTTGTTAACGCGCGTAAAGGTGATATTGGCGCATTTGATTCACCAAAATTTATTGGCTTGCCG
GTAGGTGAGGTGCTGAATGTGGCGAAGGATTATCTCGACGTAGAAGCTACGGAGCCGTTGGCGAATGGCGATGGTCTGAA
CGTGTTGATTAAGCGTGAAGTGGTAGGTTTTCGCGCCAATACGGTGGAGAAAACCGGTCATAACCGCTACCGCGTTTGGC
CAAATGATATGCCTGCCGACCTGCATAAAGTCCGTCCGCATCATCCGTTGAATCGTAATCTGGATCATAACTGGCAGCAA
GCGCTGACAAAAACCTCCAGTGAGCGCCGTGTGGCGGTTGATATCATGCTGGGCGGCTGGCAGGAACAGCTTATTCTGAC
GCTGACCAGTGAAGACGGTGTCTGCATCACGCATACGCTTGATGGGGTATTTGAGGAAGCCAACAACTCTGAAAAAGCGT
TGAATAACCTAAAAGCCGGACTGGCGAAGCTGGGACAGACGCCTTACTACGCGCGTGATATGCAGGTGACATTACCGGCG
GCGTTGTTCGTGCCAAATAGCCTGCTCAATCAGTTCCGTCGGGAGGCGATTGATATGCTTGACGCGGCGCGGCTGGCCCA
TTATCAACGAGGTCGTCGGAAACCCGTGGCGCAGCCTGCGCCGGTCTACCCGCAAACGCATCTCAGCTTTCTCGCTAATG
TCTACAACCACAAAGCGCGGGAATTTTATCACCGTTACGGCGTACAATTGATTGATGCGGCCTATGAGGCGCATCAGGAG
AAGGGCGAGGTACCGGTCATGATCACCAAACACTGCCTGCGTTTTGCGTTCAACCTTTGTCCAAAGCAGGCGAAAGGAAA
TATTAAGAGCTGGAAAGCCACGCCGATGCAGTTGGTGCATGGCGATGAGGTACTGACGCTAAAATTCGACTGCCGCCCTT
GCGAAATGCATGTCATTGGCAAAATTAAAAACCACATCTTAAAAATGCCCCAGCCCGGCAGCGTTGTCGCTTCAGTGAGC
CCTGAAGCGCTGATGAAAACGCTGCCGAAGCGCAGGGGCGTTTAA

Upstream 100 bases:

>100_bases
GATCCATTACCCACGTGATTAAGCGGGAAAACTATTTCGTTAGTTTGCGCTTCTGACTACAATAGCCGCCATTTCGCTTC
TATTGGATAAGAACGACTGT

Downstream 100 bases:

>100_bases
TTAACGAAAATAGCTTTCTGGTTTGCGCGATTTCTGCCAGTTGTGGTGCTCGCGCAAGCCTTCCGCGGATTCTTCCGCTG
CCGCCCGTAATTCATCGCTG

Product: collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 654; Mature: 654

Protein sequence:

>654_residues
MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLRDIADLVPFAHRYGARIFVTLNTILHDDELEP
AQRLITDLYNTGVDALIVQDMGILELDIPPIELHASTQCDIRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARASVGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLNVAKDYLDVEATEPLANGDGLNVLIKREVVGFRANTVEKTGHNRYRVWPNDMPADLHKVRPHHPLNRNLDHNWQQ
ALTKTSSERRVAVDIMLGGWQEQLILTLTSEDGVCITHTLDGVFEEANNSEKALNNLKAGLAKLGQTPYYARDMQVTLPA
ALFVPNSLLNQFRREAIDMLDAARLAHYQRGRRKPVAQPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHQE
KGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVHGDEVLTLKFDCRPCEMHVIGKIKNHILKMPQPGSVVASVS
PEALMKTLPKRRGV

Sequences:

>Translated_654_residues
MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLRDIADLVPFAHRYGARIFVTLNTILHDDELEP
AQRLITDLYNTGVDALIVQDMGILELDIPPIELHASTQCDIRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARASVGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLNVAKDYLDVEATEPLANGDGLNVLIKREVVGFRANTVEKTGHNRYRVWPNDMPADLHKVRPHHPLNRNLDHNWQQ
ALTKTSSERRVAVDIMLGGWQEQLILTLTSEDGVCITHTLDGVFEEANNSEKALNNLKAGLAKLGQTPYYARDMQVTLPA
ALFVPNSLLNQFRREAIDMLDAARLAHYQRGRRKPVAQPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHQE
KGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVHGDEVLTLKFDCRPCEMHVIGKIKNHILKMPQPGSVVASVS
PEALMKTLPKRRGV
>Mature_654_residues
MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLRDIADLVPFAHRYGARIFVTLNTILHDDELEP
AQRLITDLYNTGVDALIVQDMGILELDIPPIELHASTQCDIRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATI
EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
IEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARASVGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLP
VGEVLNVAKDYLDVEATEPLANGDGLNVLIKREVVGFRANTVEKTGHNRYRVWPNDMPADLHKVRPHHPLNRNLDHNWQQ
ALTKTSSERRVAVDIMLGGWQEQLILTLTSEDGVCITHTLDGVFEEANNSEKALNNLKAGLAKLGQTPYYARDMQVTLPA
ALFVPNSLLNQFRREAIDMLDAARLAHYQRGRRKPVAQPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHQE
KGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVHGDEVLTLKFDCRPCEMHVIGKIKNHILKMPQPGSVVASVS
PEALMKTLPKRRGV

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=653, Percent_Identity=92.3430321592649, Blast_Score=1266, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=425, Percent_Identity=28.7058823529412, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1789548, Length=293, Percent_Identity=31.3993174061433, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 73058; Mature: 73058

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLRDIADLVPFAHR
CCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
YGARIFVTLNTILHDDELEPAQRLITDLYNTGVDALIVQDMGILELDIPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHHEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCCHHHHHHCCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARASVGRTEHFFVPSTEKTFHRGSTDYF
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEECCCCHHHHHCCCCCEE
VNARKGDIGAFDSPKFIGLPVGEVLNVAKDYLDVEATEPLANGDGLNVLIKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCC
TVEKTGHNRYRVWPNDMPADLHKVRPHHPLNRNLDHNWQQALTKTSSERRVAVDIMLGGW
CHHHCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCC
QEQLILTLTSEDGVCITHTLDGVFEEANNSEKALNNLKAGLAKLGQTPYYARDMQVTLPA
CEEEEEEEECCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECCEEEECCH
ALFVPNSLLNQFRREAIDMLDAARLAHYQRGRRKPVAQPAPVYPQTHLSFLANVYNHKAR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EFYHRYGVQLIDAAYEAHQEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVH
HHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEE
GDEVLTLKFDCRPCEMHVIGKIKNHILKMPQPGSVVASVSPEALMKTLPKRRGV
CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNASNSLRDIADLVPFAHR
CCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
YGARIFVTLNTILHDDELEPAQRLITDLYNTGVDALIVQDMGILELDIPPIELHASTQCD
CCCEEEEEEEEHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEEECCCCCC
IRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATIEFFIHGALCVAYSGQCYISH
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHEEHHHHHEEEEEECCCEEEEE
AQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLSMKDNDQTANLGALIDAGVRSFK
CCCCCCCCCCCHHHHHCCCCEEECCCCCEEEEHHHHHHCCCCCCCCCHHHHHHCCCCEEE
IEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARASVGRTEHFFVPSTEKTFHRGSTDYF
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEECCCCHHHHHCCCCCEE
VNARKGDIGAFDSPKFIGLPVGEVLNVAKDYLDVEATEPLANGDGLNVLIKREVVGFRAN
EECCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCC
TVEKTGHNRYRVWPNDMPADLHKVRPHHPLNRNLDHNWQQALTKTSSERRVAVDIMLGGW
CHHHCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEECCC
QEQLILTLTSEDGVCITHTLDGVFEEANNSEKALNNLKAGLAKLGQTPYYARDMQVTLPA
CEEEEEEEECCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECCEEEECCH
ALFVPNSLLNQFRREAIDMLDAARLAHYQRGRRKPVAQPAPVYPQTHLSFLANVYNHKAR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EFYHRYGVQLIDAAYEAHQEKGEVPVMITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVH
HHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEE
GDEVLTLKFDCRPCEMHVIGKIKNHILKMPQPGSVVASVSPEALMKTLPKRRGV
CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]