Click here to switch to the map view.

The map label for this gene is yncE [H]

Identifier: 16764930

GI number: 16764930

Start: 1672585

End: 1673646

Strand: Reverse

Name: yncE [H]

Synonym: STM1586

Alternate gene names: 16764930

Gene position: 1673646-1672585 (Counterclockwise)

Preceding gene: 16764932

Following gene: 16764929

Centisome position: 34.46

GC content: 51.69

Gene sequence:

>1062_bases
ATGCACTTACGTCATCTTTTTTCGCCGCGCCTGCGTGGTTCTTTATTGTTAGGTTCGCTCCTCGTCGCATCCTCATTTAG
CACGCTGGCGGCGGAAGACATGCTGCGTAAAGCGGTAGGCAAAGGCGCTTATGAGATGGCCTGGAGTCAGCAAGAAAACG
CGCTCTGGCTGGCTACATCGCAAAGCCGTAAACTGGATAAAGGCGGCGTAGTTTATCGTCTCGACCCGGTGACGCTGGAA
ATCACGCAAGCGATTCATAACGATCTCAAGCCGTTCGGCGCCACCATCAATGCCGCGACCCAAACGCTGTGGTTTGGCAA
TACCATTAACAGCGCAGTTACCGCGATTGATGCCAAAACGGGTGATGTAAAAGGTCGTCTGGTACTTGATGCGCGCAAAC
GTACTGAAGAGGTTCGTCCGTTACAGCCCCGTGAGCTGGTTGCCGATGCGGCGACCAACACGATCTACATTAGCGGTGTT
GGTAAAGAGAGTGCTATTTGGGTAGTGGATGGCGAAACCATCAAACTGAAAACGACGATCGAAAATACCGGCAAAATGAG
TACGGGTCTGGCGCTCGACAGTAAAGCGCAACGCCTGTACACCACCAATGCGGATGGCGAATTTATCACTATCGATACCG
CCAGCAATAAAATTCTCAGTCGTAAGAAGTTGCTGGATGACGGTAAAGAACACTTCTTTATTAACCTGAGTCTCGATACC
GCAGGTCATCGCGCGTTTATCACCGACTCGAAGGCGACTGAGGTTCTGGTTGTCGATACCCGTAATGGCAATATTCTTGC
CAAAATCGCGGCGCCTGCTTCTTTGGCCGTCCTGTTTAACCCGACACGTAACGAGGCGTATGTGACACATCGTCAGGCAG
GTCAGGTCAGCGTGATCGATGCGAAGACCTATAACGTTGTTAAAACGTTCGATACGCCGACGTACCCGAATAGCCTGGCG
CTATCGGCAGACGGTAAAACGCTCTACGTCAGCGTGAAGCAGAAATCGACACGTGAACAGGAAGCGACGCAGCCGGATGA
TGTTATTCGCATTGCTCTGTAA

Upstream 100 bases:

>100_bases
AATGATTATTATTCTCAACTTATAATAAGTGCGGAACGAAGATCCCGCGCAGCGAAGTAGTGTGAAGCAGCTATACACGT
TTTTATCAAAGGGAGTCGTC

Downstream 100 bases:

>100_bases
ATAGGGTATGGAGGGGGAAACCCCTCCAGTCATCTCTTTAAACGCACCGATACGCCTCGTTACACCCCGCCGATAGCCTG
ATGATTCTGTGAGAATTACA

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAYEMAWSQQENALWLATSQSRKLDKGGVVYRLDPVTLE
ITQAIHNDLKPFGATINAATQTLWFGNTINSAVTAIDAKTGDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGV
GKESAIWVVDGETIKLKTTIENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKILSRKKLLDDGKEHFFINLSLDT
AGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLAVLFNPTRNEAYVTHRQAGQVSVIDAKTYNVVKTFDTPTYPNSLA
LSADGKTLYVSVKQKSTREQEATQPDDVIRIAL

Sequences:

>Translated_353_residues
MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAYEMAWSQQENALWLATSQSRKLDKGGVVYRLDPVTLE
ITQAIHNDLKPFGATINAATQTLWFGNTINSAVTAIDAKTGDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGV
GKESAIWVVDGETIKLKTTIENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKILSRKKLLDDGKEHFFINLSLDT
AGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLAVLFNPTRNEAYVTHRQAGQVSVIDAKTYNVVKTFDTPTYPNSLA
LSADGKTLYVSVKQKSTREQEATQPDDVIRIAL
>Mature_353_residues
MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAYEMAWSQQENALWLATSQSRKLDKGGVVYRLDPVTLE
ITQAIHNDLKPFGATINAATQTLWFGNTINSAVTAIDAKTGDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGV
GKESAIWVVDGETIKLKTTIENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKILSRKKLLDDGKEHFFINLSLDT
AGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLAVLFNPTRNEAYVTHRQAGQVSVIDAKTYNVVKTFDTPTYPNSLA
LSADGKTLYVSVKQKSTREQEATQPDDVIRIAL

Specific function: Unknown

COG id: COG3391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787724, Length=353, Percent_Identity=89.5184135977337, Blast_Score=615, Evalue=1e-177,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR015943 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38504; Mature: 38504

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAYEMAWSQQENALWLATS
CCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEC
QSRKLDKGGVVYRLDPVTLEITQAIHNDLKPFGATINAATQTLWFGNTINSAVTAIDAKT
CCCCCCCCCEEEEECCCEEEEHHHHHHCCCCCCCEEECCEEEEEECCCCCHHEEEEECCC
GDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGVGKESAIWVVDGETIKLKTTI
CCCCEEEEEECHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEECCEEEEEEEE
ENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKILSRKKLLDDGKEHFFINLSLDT
CCCCCEECCEEECCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEEEC
AGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLAVLFNPTRNEAYVTHRQAGQVSVID
CCCEEEEECCCCCEEEEEECCCCCEEEEEECCEEEEEEECCCCCCEEEEECCCCEEEEEE
AKTYNVVKTFDTPTYPNSLALSADGKTLYVSVKQKSTREQEATQPDDVIRIAL
CCCEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCCHHHCCCCCCEEEEEC
>Mature Secondary Structure
MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAYEMAWSQQENALWLATS
CCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEC
QSRKLDKGGVVYRLDPVTLEITQAIHNDLKPFGATINAATQTLWFGNTINSAVTAIDAKT
CCCCCCCCCEEEEECCCEEEEHHHHHHCCCCCCCEEECCEEEEEECCCCCHHEEEEECCC
GDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGVGKESAIWVVDGETIKLKTTI
CCCCEEEEEECHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCEEEEEECCEEEEEEEE
ENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKILSRKKLLDDGKEHFFINLSLDT
CCCCCEECCEEECCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEEEC
AGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLAVLFNPTRNEAYVTHRQAGQVSVID
CCCEEEEECCCCCEEEEEECCCCCEEEEEECCEEEEEEECCCCCCEEEEECCCCEEEEEE
AKTYNVVKTFDTPTYPNSLALSADGKTLYVSVKQKSTREQEATQPDDVIRIAL
CCCEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCCHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]