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The map label for this gene is ynfH [H]

Identifier: 16764841

GI number: 16764841

Start: 1572931

End: 1573788

Strand: Reverse

Name: ynfH [H]

Synonym: STM1496

Alternate gene names: 16764841

Gene position: 1573788-1572931 (Counterclockwise)

Preceding gene: 16764842

Following gene: 16764840

Centisome position: 32.4

GC content: 56.88

Gene sequence:

>858_bases
ATGGGAAGTGGATGGCATGAATGGCCGTTGATGATCTTCACGGTCTTTGGTCAGTGCGTGGTCGGCGCGTTAATCGTTAG
CGGACTGGGCTGGCTGACGGCAAAAGACGATACCATCGCCCGTCAGCGCATCGTGCGCAGCATGTTTTTTCTGTGGCTGG
TGATGGGACTGGGATTCCTCGCGTCGATTATGCATCTCGGCTCGCCGATGCGCGCGTTTAACTCGCTTAACCGCGTAGGC
GCTTCCGCACTGAGTAATGAAATCGCCGCAGGATCGGTGTTCTTTGCCGTAGGCGGCATCTGGTGGCTGGTGGCGGTACT
CGGTAAAATGCCCCCGGCGCTGGGTAAAGTGTGGCTGCTGGTCAGTATGGCGCTCGGCGTTGCATTCATCTGGGCAATGA
CGCTCGTTTATCAGATAGATACCGTGCCAACCTGGTATAATGGCTACACCACGCTGGCCTTTTTCCTCACGGCATTCCTG
TGCGGCCCGGTGTTTGCGGCGTTACTGCTACGCATCGCGCGCGTCCCATTTTGCAGCGTGACGTTTGCCAGTATTAGCGG
CCTGGCATTGGTGGTGTGCGTGACGGTCATCGTACTACAAGGACTGTCTCTCTCAACCATTCACAGTTCCGTGCAACAGG
CCAGCCATCTCGCACCGGATTACGGTATGCTACAGGTCTGGCGCATTGTCTTGCTTGCTGCCGGATTAGGCTGCTGGCTA
TGTCCGCTAATCCGTCGCCGCGAACCGCATACCGTTGGTTTGCTGCTCGGTGTCGTGCTGGTGCTGGCAGGCGAAATTAT
TGGCCGCGGACTTTTTTATGGCCTGCATATGACCGTAGGTATGGCCGTCGCAGGTTAA

Upstream 100 bases:

>100_bases
GCGCATTTCACGAAGCCGAATATTGTGATTAAACCCAACGCCAACAGCCGCCCGACCGGGGACACTACCGGTTATCTGGC
CAATCCGAAGGAGGTATAAG

Downstream 100 bases:

>100_bases
TTTATGCGTGCGGGGCGACCCGCACCTTTCGGGATTGTTTGAATGACCACTTTTTTACAACGTGATGATTTTGCAGTAAC
GGCGCGTGTTCTTGGCGCGT

Product: dimethylsulfoxide reductase

Products: NA

Alternate protein names: DMSO reductase anchor subunit ynfH [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MGSGWHEWPLMIFTVFGQCVVGALIVSGLGWLTAKDDTIARQRIVRSMFFLWLVMGLGFLASIMHLGSPMRAFNSLNRVG
ASALSNEIAAGSVFFAVGGIWWLVAVLGKMPPALGKVWLLVSMALGVAFIWAMTLVYQIDTVPTWYNGYTTLAFFLTAFL
CGPVFAALLLRIARVPFCSVTFASISGLALVVCVTVIVLQGLSLSTIHSSVQQASHLAPDYGMLQVWRIVLLAAGLGCWL
CPLIRRREPHTVGLLLGVVLVLAGEIIGRGLFYGLHMTVGMAVAG

Sequences:

>Translated_285_residues
MGSGWHEWPLMIFTVFGQCVVGALIVSGLGWLTAKDDTIARQRIVRSMFFLWLVMGLGFLASIMHLGSPMRAFNSLNRVG
ASALSNEIAAGSVFFAVGGIWWLVAVLGKMPPALGKVWLLVSMALGVAFIWAMTLVYQIDTVPTWYNGYTTLAFFLTAFL
CGPVFAALLLRIARVPFCSVTFASISGLALVVCVTVIVLQGLSLSTIHSSVQQASHLAPDYGMLQVWRIVLLAAGLGCWL
CPLIRRREPHTVGLLLGVVLVLAGEIIGRGLFYGLHMTVGMAVAG
>Mature_284_residues
GSGWHEWPLMIFTVFGQCVVGALIVSGLGWLTAKDDTIARQRIVRSMFFLWLVMGLGFLASIMHLGSPMRAFNSLNRVGA
SALSNEIAAGSVFFAVGGIWWLVAVLGKMPPALGKVWLLVSMALGVAFIWAMTLVYQIDTVPTWYNGYTTLAFFLTAFLC
GPVFAALLLRIARVPFCSVTFASISGLALVVCVTVIVLQGLSLSTIHSSVQQASHLAPDYGMLQVWRIVLLAAGLGCWLC
PLIRRREPHTVGLLLGVVLVLAGEIIGRGLFYGLHMTVGMAVAG

Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. The C subunit anchors the other two subunits to the membrane and stabilize the catalytic subunits [H]

COG id: COG3302

COG function: function code R; DMSO reductase anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli dmsC [H]

Homologues:

Organism=Escherichia coli, GI1787873, Length=285, Percent_Identity=76.8421052631579, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI1787123, Length=286, Percent_Identity=60.8391608391608, Blast_Score=310, Evalue=8e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007059 [H]

Pfam domain/function: PF04976 DmsC [H]

EC number: NA

Molecular weight: Translated: 30687; Mature: 30556

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GSGWHEWPLMIFTVFGQCVVGALIVSGLGWLTAKDDTIARQRIVRSMFFLWLVMGLGFL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ASIMHLGSPMRAFNSLNRVGASALSNEIAAGSVFFAVGGIWWLVAVLGKMPPALGKVWLL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VSMALGVAFIWAMTLVYQIDTVPTWYNGYTTLAFFLTAFLCGPVFAALLLRIARVPFCSV
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
TFASISGLALVVCVTVIVLQGLSLSTIHSSVQQASHLAPDYGMLQVWRIVLLAAGLGCWL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
CPLIRRREPHTVGLLLGVVLVLAGEIIGRGLFYGLHMTVGMAVAG
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]