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The map label for this gene is ydgF [H]

Identifier: 16764827

GI number: 16764827

Start: 1560250

End: 1560612

Strand: Direct

Name: ydgF [H]

Synonym: STM1482

Alternate gene names: 16764827

Gene position: 1560250-1560612 (Clockwise)

Preceding gene: 16764825

Following gene: 16764828

Centisome position: 32.12

GC content: 44.63

Gene sequence:

>363_bases
ATGTTTTACTGGATTTTATTAGCTCTGGCTATCGCGACTGAAATTACCGGCACGCTCTCAATGAAATGGGCTAGTGTGGG
TAATGGCAATGCGGGTTTTATTTTAATGCTGGTGATGATCACGCTGTCATATATATTTCTTTCTTTTGCGGTAAAAAAGA
TTGCCCTGGGTGTAGCGTATGCCTTATGGGAAGGGATCGGCATTTTATTTATTACCATTTTTAGCGTGCTGCTATTTGAT
GAAGCATTATCAACCATGAAGATTGCCGGCTTGCTGACGCTGGTCGCCGGCATCGTATTGATCAAATCAGGGACGCGTAA
ACCCGGCAAACCGGTGAAGGAGGCGACTCGTGCAACAATTTGA

Upstream 100 bases:

>100_bases
TGCCTGAGCTGGCGCAATGCGCTGTGCTAACTGATTTTATTTTTTAGTTTGCTGCGTGCAGCAGACTCGAAAGAGTATAT
TCTCATGCAGGAGAAGTGTC

Downstream 100 bases:

>100_bases
ATGGATACACGGCGCCTGGCTTGGGCTGGCAATAATGCTGGAAATCGCGGCTAACGTTCTGTTGAAATTTTCGGACGGCT
TTCGCCGTAAATGCTATGGC

Product: multidrug efflux system protein MdtJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSYIFLSFAVKKIALGVAYALWEGIGILFITIFSVLLFD
EALSTMKIAGLLTLVAGIVLIKSGTRKPGKPVKEATRATI

Sequences:

>Translated_120_residues
MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSYIFLSFAVKKIALGVAYALWEGIGILFITIFSVLLFD
EALSTMKIAGLLTLVAGIVLIKSGTRKPGKPVKEATRATI
>Mature_120_residues
MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSYIFLSFAVKKIALGVAYALWEGIGILFITIFSVLLFD
EALSTMKIAGLLTLVAGIVLIKSGTRKPGKPVKEATRATI

Specific function: Catalyzes the excretion of spermidine [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. MdtJ subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787884, Length=118, Percent_Identity=83.8983050847458, Blast_Score=188, Evalue=9e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 12915; Mature: 12915

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSYIFLSFAVKKIALGVAY
CHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALWEGIGILFITIFSVLLFDEALSTMKIAGLLTLVAGIVLIKSGTRKPGKPVKEATRATI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSYIFLSFAVKKIALGVAY
CHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALWEGIGILFITIFSVLLFDEALSTMKIAGLLTLVAGIVLIKSGTRKPGKPVKEATRATI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA