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The map label for this gene is ydgA [H]

Identifier: 16764812

GI number: 16764812

Start: 1539201

End: 1540709

Strand: Reverse

Name: ydgA [H]

Synonym: STM1466

Alternate gene names: 16764812

Gene position: 1540709-1539201 (Counterclockwise)

Preceding gene: 16764813

Following gene: 16764811

Centisome position: 31.72

GC content: 52.49

Gene sequence:

>1509_bases
ATGAAAAAAACACTGGTAGCTGCAGGTGTAGTAATTGCACTTGGCATCGTCTGGACAGGCGGCGCCTGGTATACGGGGAA
AAAGCTGGAGAACCATCTTGCAGAAATGGTGACTCAGGCCAATGAACAGCTCAAGCGTACTGCGCCGGAGGCCGGTGTCG
AATTAAGTTATCAAAACTACCAGCGCGGCGTGTTCAGTAGCCATCTGCAACTGGTTGTCAAACCGGTTGCCGGCGCAGAC
AATACCTGGTTGAAGCCCGGGCAAAGCATTGTGCTGGACGAGTCCGTTTCACATGGCCCCTTCCCGCTCGCCCAGCTCAA
AACGCTCAATCTGATCCCTTCTATGGCGTCGGTAAAAACCACTCTGGTGAATAACGATGCGGCAAAACCCCTCTTTGATA
TTGCGAAAGGCGACGCGCCCTTTGTTATCAATACCCGCATTGGTTATGGCGGCGATACCCGCTCCGATATCTCTCTCAAG
CCGTTAAACTACGAGAATGCCGGTGAAAAGGTCGCCTTTAGCGGCGGCGAGTTCCAGCTTAACGCCGATAAAGACGGTAA
TGTGGTTTCGCTGTCAGGCGAAGCGCAGAGCGGCCTGGTCGATGCCGTTAACGAATATAATCAGAAGGTCCAACTCACCT
TTAATAATTTGAAAACCGACGGTACCAGTAAACTGGCAAGCTTTGGCGAACGTGTGGGCGACCAAAAGTTAACGCTGGAT
AAACTGTCCATCGCCATTGAGGGTAAAGAGATGGCGGTGCTGGAAGGGATGGAAATTACCGGCAAGTCCGATCTCGTCAA
CGACGGAAAAACCATTAACAGCCAGTTGGATTACTCGCTTAACAGCCTGAAAGTGCAGAATCAGGATTTGGGCAGCGGTA
AATTAACGCTGAAAGTCGGCCAAATCGACGGCGAAGCCTGGCACCAGTTTAGTCAGCAATATCATGCGCAAACGCAGGCG
CTGCTGAATCAGCCGGACGTGGCGCAGAATCCTGAGCTTTATCAGCAAAAAGTCACCGAAGCGTTCTTTAGCGCTCTCCC
CGTGCTGTTAAAAGGCGATCCGGTACTGACTCTGGCGCCGCTTAGCTGGAAAAACGCCAAAGGGGAAACCACGCTGAATC
TGTCGCTGTTCCTCAAAGATCCGGCAACCACAACGGCACAACCACAAACGCTGGCGCAGGAAGTCGACCGCTCCGTGAAA
TCGCTGGATGCGAAACTGGCAATTCCAATGGACATGGCGGTCGAGTTTATGACGCAGATAGCAAAACTGGAAGGCTATCA
GCAGGATGATGCGGAAAAACTGGCAAAACAGCAGGTGCAGGGGCTGTCCGCAATGGGTCAGATGTTCCGACTGACAACGC
TGAAGGATAATACTATCGCCTCCAGTTTGCAGTACGCCAATGGCCAGATCACGCTCAACGGACAAAAAATGCCGTTGGAA
GACTTTGTCGGCCTGTTTGGGATGCCGGCGCTTTCCGTTCCGGACGTTCCGGCGCTGCCTCAACAATAA

Upstream 100 bases:

>100_bases
ACGTACTGAATTTTTTAACAACTCTTGCTAAGCTTATAACAGACGTAAAACTCCTCCAGGCGGTTTAATCCGCCTGGTTT
CATTTTTATGGACAATTGAT

Downstream 100 bases:

>100_bases
TCGCCTTGCCGGGTGTCGCGACGCTGCACCCGGTCTGCGCCGAACGACGCGCAGCCTCTACTTTTGCGTTACCAGGCGAG
CGGCTATCGTTTGACTCCGC

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
NTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEITGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ

Sequences:

>Translated_502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
NTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEITGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ
>Mature_502_residues
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGAD
NTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK
PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
KLSIAIEGKEMAVLEGMEITGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQA
LLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVK
SLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
DFVGLFGMPALSVPDVPALPQQ

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=502, Percent_Identity=79.8804780876494, Blast_Score=855, Evalue=0.0,
Organism=Escherichia coli, GI87082339, Length=484, Percent_Identity=32.8512396694215, Blast_Score=259, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 54284; Mature: 54284

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNY
CCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHH
QRGVFSSHLQLVVKPVAGADNTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKT
HHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHH
TLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLKPLNYENAGEKVAFSGGEFQL
EEECCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEECCCEEEE
NADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
ECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KLSIAIEGKEMAVLEGMEITGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEEECCEECCCCCCCCCCCEECCHHCCCHHHEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEC
LSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVKSLDAKLAIPMDMAVEFMTQI
CCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH
AKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHEECCCEEEECCCCCCHH
DFVGLFGMPALSVPDVPALPQQ
HHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQLKRTAPEAGVELSYQNY
CCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHH
QRGVFSSHLQLVVKPVAGADNTWLKPGQSIVLDESVSHGPFPLAQLKTLNLIPSMASVKT
HHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHH
TLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLKPLNYENAGEKVAFSGGEFQL
EEECCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEECCCEEEE
NADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLKTDGTSKLASFGERVGDQKLTLD
ECCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KLSIAIEGKEMAVLEGMEITGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEEECCEECCCCCCCCCCCEECCHHCCCHHHEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELYQQKVTEAFFSALPVLLKGDPVLTLAP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEC
LSWKNAKGETTLNLSLFLKDPATTTAQPQTLAQEVDRSVKSLDAKLAIPMDMAVEFMTQI
CCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHH
AKLEGYQQDDAEKLAKQQVQGLSAMGQMFRLTTLKDNTIASSLQYANGQITLNGQKMPLE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHEECCCEEEECCCCCCHH
DFVGLFGMPALSVPDVPALPQQ
HHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]