Click here to switch to the map view.

The map label for this gene is ssaQ

Identifier: 16764768

GI number: 16764768

Start: 1497708

End: 1498676

Strand: Direct

Name: ssaQ

Synonym: STM1418

Alternate gene names: 16764768

Gene position: 1497708-1498676 (Clockwise)

Preceding gene: 16764767

Following gene: 16764769

Centisome position: 30.83

GC content: 46.65

Gene sequence:

>969_bases
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGGTGGAGATACTTCCAACGCAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGCTAATTGGCACCGCTAATCGATCGGCTATCGATCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCAACCCTCTGTCAGAACGAGCCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAGCATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGACAACAGATTTATCCTGCCCCTCCTGTGGTA
GTCCCTGTATATTCAGGCTGGTGCCAGCTTACATTAATCGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTCGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGAATCTACGCAAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGACGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGCCCAATGTCAAAGAGTGAC
GGAACGTCTTCAGTCGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGGTCGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGTGGATGTTTTGCGCCAGAGGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGCAATGAATTTATGGTGCGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Upstream 100 bases:

>100_bases
GTCCCTCATCATGAAATTTACCGTTCGATGAAAGCGCTAAAGCAGTGGCTGGAGTCTCAGTTGCTGCATATGGGGTATAT
AATTTCCCTGGAGATATTCT

Downstream 100 bases:

>100_bases
ACCTGATAAGAAAAATAATATGCGAACAATATAATAGCGTTCCAGGTCGTGTCATGAGAGATACAGTATGTCTTTACCCG
ATTCGCCTTTGCAACTGATT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYSGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

Sequences:

>Translated_322_residues
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYSGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA
>Mature_322_residues
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYSGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

Specific function: Part of a type III secretion system

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSAQ_SALTY (P74860)

Other databases:

- EMBL:   AE006468
- EMBL:   Y09357
- EMBL:   X99944
- RefSeq:   NP_460383.1
- ProteinModelPortal:   P74860
- SMR:   P74860
- PRIDE:   P74860
- GeneID:   1252936
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1418
- NMPDR:   fig|99287.1.peg.1374
- HOGENOM:   HBG671299
- OMA:   RSVIDPE
- ProtClustDB:   PRK08035
- BioCyc:   STYP99287:STM1418-MONOMER
- GO:   GO:0006935
- InterPro:   IPR001172
- InterPro:   IPR001543
- InterPro:   IPR013385
- PRINTS:   PR00956
- TIGRFAMs:   TIGR02551

Pfam domain/function: PF01052 SpoA; SSF101801 SpoA

EC number: NA

Molecular weight: Translated: 36010; Mature: 36010

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQR
CCCCCCCCCCEEEEECCCCCEEHHEEEEHHHCCCCCCEEEEEEECCCCCCEEHHHHHHHH
WCEGLIGTANRSAIDPELLYGIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKW
HHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCHHCCCCEEEEEEEE
TVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVVVPVYSGWCQLTLIELESIEI
EEECCCEEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCEEEEEEEEEEEEE
GMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
CCCEEEEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC
GTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGE
CCCCEEHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCCCCCEEEEEECCEEECCCC
LIACGNEFMVRITRWYLCKNTA
EEEECCHHHHEEEEEEEECCCC
>Mature Secondary Structure
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQR
CCCCCCCCCCEEEEECCCCCEEHHEEEEHHHCCCCCCEEEEEEECCCCCCEEHHHHHHHH
WCEGLIGTANRSAIDPELLYGIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKW
HHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCHHCCCCEEEEEEEE
TVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVVVPVYSGWCQLTLIELESIEI
EEECCCEEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCEEEEEEEEEEEEE
GMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
CCCEEEEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC
GTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGE
CCCCEEHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCCCCCEEEEEECCEEECCCC
LIACGNEFMVRITRWYLCKNTA
EEEECCHHHHEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 9140973; 9023191