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The map label for this gene is ssaJ

Identifier: 16764759

GI number: 16764759

Start: 1490277

End: 1491026

Strand: Direct

Name: ssaJ

Synonym: STM1409

Alternate gene names: 16764759

Gene position: 1490277-1491026 (Clockwise)

Preceding gene: 16764758

Following gene: 16764760

Centisome position: 30.68

GC content: 42.0

Gene sequence:

>750_bases
ATGAAGGTTCATCGTATAGTATTTCTTACTGTCCTTACGTTCTTTCTTACGGCATGTGATGTGGATCTTTATCGCTCATT
GCCAGAAGATGAAGCGAATCAAATGCTGGCATTACTTATGCAGCATCATATTGATGCGGAAAAAAAACAGGAAGAGGATG
GTGTAACCTTACGTGTCGAGCAGTCGCAGTTTATTAATGCGGTTGAGCTACTTAGACTTAACGGTTATCCGCATAGGCAG
TTTACAACGGCGGATAAGATGTTTCCGGCTAATCAGTTAGTGGTATCACCCCAGGAAGAACAGCAGAAGATTAATTTTTT
AAAAGAACAAAGAATTGAAGGAATGCTGAGTCAGATGGAGGGCGTGATTAATGCAAAAGTGACCATTGCGCTACCGACTT
ATGATGAGGGAAGTAACGCTTCTCCGAGCTCAGTTGCCGTATTTATAAAATATTCACCTCAGGTCAATATGGAGGCCTTT
CGGGTAAAAATTAAAGATTTAATAGAGATGTCAATCCCTGGGTTGCAATACAGTAAGATTAGTATCTTGATGCAGCCTGC
TGAATTCAGAATGGTAGCTGACGTACCCGCGAGACAAACATTCTGGATTATGGACGTTATCAACGCCAATAAAGGGAAGG
TGGTGAAGTGGTTGATGAAATACCCTTATCCGTTGATGTTATCGTTGACAGGACTGTTATTAGGAGTGGGCATCCTGATC
GGCTATTTTTGCCTGAGACGCCGTTTTTGA

Upstream 100 bases:

>100_bases
CCAGACAAATGGATTATATGCAGTTAACGGTAGGCGTCGATTATCTTGCCAGAATATCAGGCGCAGCATCGCAAGCGCTT
AATAAGCTGGATAACATGGC

Downstream 100 bases:

>100_bases
GCCGACCTGATCCCGAGGTGTTGCAACTTTATCGTTATTTCTGGCAACCTGCTCGTTACGCTGTACCGGAATGGCTGGAT
AAGCTGGGCTTTCATCTTTC

Product: needle complex inner membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKVHRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQ
FTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF
RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYPLMLSLTGLLLGVGILI
GYFCLRRRF

Sequences:

>Translated_249_residues
MKVHRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQ
FTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF
RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYPLMLSLTGLLLGVGILI
GYFCLRRRF
>Mature_249_residues
MKVHRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQ
FTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF
RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYPLMLSLTGLLLGVGILI
GYFCLRRRF

Specific function: Unknown

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSAJ_SALTY (P74852)

Other databases:

- EMBL:   Y09357
- EMBL:   AE006468
- RefSeq:   NP_460374.1
- ProteinModelPortal:   P74852
- SMR:   P74852
- GeneID:   1252927
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1409
- NMPDR:   fig|99287.1.peg.1365
- HOGENOM:   HBG671305
- OMA:   CGARVEL
- ProtClustDB:   PRK15348
- BioCyc:   STYP99287:STM1409-MONOMER
- InterPro:   IPR003282
- InterPro:   IPR006182
- PRINTS:   PR01338
- TIGRFAMs:   TIGR02544

Pfam domain/function: PF01514 YscJ_FliF

EC number: NA

Molecular weight: Translated: 28522; Mature: 28522

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd17f8f0)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVHRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVE
CCCHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEC
QSQFINAVELLRLNGYPHRQFTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQME
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH
GVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKI
HHHCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE
SILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYPLMLSLTGLLLGVGILI
EEEECCHHHEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GYFCLRRRF
HHHHHHCCH
>Mature Secondary Structure
MKVHRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVE
CCCHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEC
QSQFINAVELLRLNGYPHRQFTTADKMFPANQLVVSPQEEQQKINFLKEQRIEGMLSQME
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHH
GVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKI
HHHCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE
SILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYPLMLSLTGLLLGVGILI
EEEECCHHHEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GYFCLRRRF
HHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609