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The map label for this gene is ssaD

Identifier: 16764745

GI number: 16764745

Start: 1481876

End: 1483087

Strand: Direct

Name: ssaD

Synonym: STM1395

Alternate gene names: NA

Gene position: 1481876-1483087 (Clockwise)

Preceding gene: 16764744

Following gene: 16764746

Centisome position: 30.51

GC content: 43.65

Gene sequence:

>1212_bases
ATGGCATATCTCATGGTTAATCCAAAGAGTTCCTGGAAAATACGTTTTTTAGGTCACGTTTTACAAGGCCGGGAAGTATG
GCTGAATGAAGGTAACCTGTCACTGGGGGAGAAGGGATGCGATATTTGTATTCCGCTGGCTATAAATGAAAAAATTATTC
TGAGAGAACAGGCAGATAGTTTATTTGTTGATGCCGGGAAAGCCAGAGTTAGAGTTAATGGCCGCAGATTTAATCCAAAT
AAGCCGCTACCATCCAGTGGGGTTTTGCAGGTTGCGGGAGTGGCTATCGCGTTTGGTAAACAGGATTGTGAACTTGCTGA
TTATCAAATACCCGTTTCCAGATCAGGGTACTGGTGGTTGGCTGGCGTATTCTTGATTTTCATCGGTGGAATGGGTGTCC
TGTTAAGTATTAGTGGTCAGCCTGAAACGGTAAATGACTTACCTTTGCGGGTTAAGTTTTTATTAGACAAAAGCAATATT
CATTATGTGCGGGCGCAATGGAAAGAAGATGGCAGCCTGCAGTTGTCCGGTTATTGCTCGTCAAGCGAACAGATGCAAAA
GGTGAGAGCGACTCTCGAATCATGGGGGGTCATGTATCGGGATGGTGTAATCTGTGATGACTTATTGGTACGAGAAGTGC
AGGATGTTTTGATAAAAATGGGTTACCCGCATGCTGAAGTATCCAGCGAAGGGCCGGGGAGCGTGTTAATTCATGATGAT
ATACAAATGGATCAGCAATGGCGCAAGGTTCAACCATTACTTGCAGATATTCCCGGGTTATTGCACTGGCAGATTAGTCA
CTCTCATCAGTCTCAGGGGGATGATATTATTTCTGCGATAATAGAGAACGGTTTAGTGGGGCTTGTCAATGTTACGCCAA
TGCGGCGCTCTTTTGTTATCAGTGGTGTACTGGATGAATCTCATCAACGCATTTTGCAAGAAACGTTAGCAGCATTAAAG
AAAAAGGATCCCGCTCTTTCTTTAATTTATCAGGATATTGCGCCTTCCCATGATGAAAGCAAGTATCTGCCTGCGCCAGT
GGCTGGCTTTGTACAGAGTCGCCATGGTAATTACTTATTACTGACGAATAAAGAGCGTTTACGTGTAGGGGCATTGTTAC
CCAATGGGGGAGAAATTGTCCATCTGAGTGCCGATGTGGTAACGATTAAACATTATGATACTTTGATTAACTATCCATTA
GATTTTAAGTGA

Upstream 100 bases:

>100_bases
TTGGGCGATATTCCTGTTGTAGGTCATTTGTTTCGCAATGATACGACTCAAGTACATAGTGTAATCAGGCTTTTTTTGAT
TAAAGCCTCAGTAGTAAATA

Downstream 100 bases:

>100_bases
GTGGAAAATGACAACTTTGACCCGGTTAGAAGATTTGCTGCTTCATTCGCGTGAAGAGGCCAAAGGCATAATTTTACAAT
TAAGGGCTGCCCGGAAACAG

Product: virulence protein

Products: NA

Alternate protein names: Type III Secretion Apparatus Protein; Type III Secretion Apparatus Protein YscD/HrpQ Family; YscD/HrpQ Family Type III Secretion Apparatus Protein; Type III Secretion Apparatus; Pathogenicity Island Protein

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MAYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLAINEKIILREQADSLFVDAGKARVRVNGRRFNPN
KPLPSSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNI
HYVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLIKMGYPHAEVSSEGPGSVLIHDD
IQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALK
KKDPALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPL
DFK

Sequences:

>Translated_403_residues
MAYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLAINEKIILREQADSLFVDAGKARVRVNGRRFNPN
KPLPSSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNI
HYVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLIKMGYPHAEVSSEGPGSVLIHDD
IQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALK
KKDPALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPL
DFK
>Mature_402_residues
AYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLAINEKIILREQADSLFVDAGKARVRVNGRRFNPNK
PLPSSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNIH
YVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLIKMGYPHAEVSSEGPGSVLIHDDI
QMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKK
KDPALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPLD
FK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44850; Mature: 44719

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLAINEKIILREQADS
CEEEEECCCCCCEEEEEHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCC
LFVDAGKARVRVNGRRFNPNKPLPSSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWL
EEEECCCEEEEECCEEECCCCCCCCCCCEEEEEEEEEECCCCCCEECEEECCCCCCCHHH
AGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNIHYVRAQWKEDGSLQLSGYCS
HHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEEECC
SSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLIKMGYPHAEVSSEGPGSVLIHDD
CHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
IQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVI
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHEEE
SGVLDESHQRILQETLAALKKKDPALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLL
EHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEE
LTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPLDFK
EECCCCEEEEEECCCCCCEEEEECCEEEEEEEHHHCCCCCCCC
>Mature Secondary Structure 
AYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLAINEKIILREQADS
EEEEECCCCCCEEEEEHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCC
LFVDAGKARVRVNGRRFNPNKPLPSSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWL
EEEECCCEEEEECCEEECCCCCCCCCCCEEEEEEEEEECCCCCCEECEEECCCCCCCHHH
AGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNIHYVRAQWKEDGSLQLSGYCS
HHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEEECC
SSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLIKMGYPHAEVSSEGPGSVLIHDD
CHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
IQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVI
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHEEE
SGVLDESHQRILQETLAALKKKDPALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLL
EHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEE
LTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPLDFK
EECCCCEEEEEECCCCCCEEEEECCEEEEEEEHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA