Click here to switch to the map view.

The map label for this gene is ydiP [H]

Identifier: 16764706

GI number: 16764706

Start: 1435737

End: 1436627

Strand: Direct

Name: ydiP [H]

Synonym: STM1355

Alternate gene names: 16764706

Gene position: 1435737-1436627 (Clockwise)

Preceding gene: 16764700

Following gene: 16764715

Centisome position: 29.56

GC content: 42.65

Gene sequence:

>891_bases
ATGTATCAGCGCTGTTTTGACTCCGCCGCGGAGACGATTTTTGAACAGGACAAGACCCCTCGATTTTCACGTTTTGTCAT
TAGCGATGATCCAAACTGGGAGTCTGGCCATCATATGCATGATAATGAAACAGAGCTTATTTACGTCAAAAAAGGGATAG
CCAGGTTAATTATTGACTCTTCACTCTACGTCGCGCATGCGGACGATATTGTCGTCGTTGAGCGGGGGCGGCTACACGCT
GTAGCATCCGACAGCAATTCGCCGGCTACCACCTATACCTGTGCGCTGTATGGGTTTTGTTTTCCAGGTTGGGAAGAAAA
CCAACTATTGCAGAGTCATTCCTGTCCGGTGGTTTCCGTGGTTCAGGGAAAAGGGGTCATTAAAAGTATCTTTAATGAAT
TAAGCGTGTTACTTCCGCAGGGGAAAAACGTATTGGCTTCCTCTGTATACGATGCATTTGCTTACACTCTGACCGCACTT
TACTATGAAAATTTTAAAAACGCCTATCGTTCTGAACAAGGTTACATTAAAAAAGATGTATTAATTAAGGATGTACTTGT
TTATCTCAATAATAATTATCGTGAGAAAATCACGCTTGACCAGCTATCGAAAAAATTTCGCGCCAGCGTCAGTTATATAT
GCCATGAATTTGCCAAAGAATATCATATATCCCCTATCAACTATGTTATTCAACGACGTATGACCGAGGCCAAGTTTGCG
CTGACAAACACTGAGTCGCCACTGGCAGAAATTTCATGGCGGGTAGGATATGAAAATGTGGACCATTTTGCCAAATTGTT
TATGCGGCATGTAGGATGTTCTCCCAACGATTATCGTAAGCAATTTAAAAATAGTCTGGTTGAGCAGGCGTATTTGCTGC
CAAATACCTGA

Upstream 100 bases:

>100_bases
AACGAATAATCTTGTTTTGCTGGTAATCTCCACGGTTGTACAACACTGACGCTCGCTTTATTTTATCCTGGTTATCTTTT
TAAACCTGACAGAGGTTATT

Downstream 100 bases:

>100_bases
CGGCGAAATATATCTGATTTATTCGGCCTGATGCCGTAAAGCAGTCAGGCCGAATAAGACGTTCCGGTACGATCCTTACT
TGTTCTGATAGTCTTTCAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNETELIYVKKGIARLIIDSSLYVAHADDIVVVERGRLHA
VASDSNSPATTYTCALYGFCFPGWEENQLLQSHSCPVVSVVQGKGVIKSIFNELSVLLPQGKNVLASSVYDAFAYTLTAL
YYENFKNAYRSEQGYIKKDVLIKDVLVYLNNNYREKITLDQLSKKFRASVSYICHEFAKEYHISPINYVIQRRMTEAKFA
LTNTESPLAEISWRVGYENVDHFAKLFMRHVGCSPNDYRKQFKNSLVEQAYLLPNT

Sequences:

>Translated_296_residues
MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNETELIYVKKGIARLIIDSSLYVAHADDIVVVERGRLHA
VASDSNSPATTYTCALYGFCFPGWEENQLLQSHSCPVVSVVQGKGVIKSIFNELSVLLPQGKNVLASSVYDAFAYTLTAL
YYENFKNAYRSEQGYIKKDVLIKDVLVYLNNNYREKITLDQLSKKFRASVSYICHEFAKEYHISPINYVIQRRMTEAKFA
LTNTESPLAEISWRVGYENVDHFAKLFMRHVGCSPNDYRKQFKNSLVEQAYLLPNT
>Mature_296_residues
MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNETELIYVKKGIARLIIDSSLYVAHADDIVVVERGRLHA
VASDSNSPATTYTCALYGFCFPGWEENQLLQSHSCPVVSVVQGKGVIKSIFNELSVLLPQGKNVLASSVYDAFAYTLTAL
YYENFKNAYRSEQGYIKKDVLIKDVLVYLNNNYREKITLDQLSKKFRASVSYICHEFAKEYHISPINYVIQRRMTEAKFA
LTNTESPLAEISWRVGYENVDHFAKLFMRHVGCSPNDYRKQFKNSLVEQAYLLPNT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=292, Percent_Identity=80.8219178082192, Blast_Score=500, Evalue=1e-143,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34024; Mature: 34024

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNETELIYVKKGIARLIIDS
CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCC
SLYVAHADDIVVVERGRLHAVASDSNSPATTYTCALYGFCFPGWEENQLLQSHSCPVVSV
CEEEEECCCEEEEECCCEEEEECCCCCCCCEEHHHHHHCCCCCCCCHHHHHHCCCCEEEE
VQGKGVIKSIFNELSVLLPQGKNVLASSVYDAFAYTLTALYYENFKNAYRSEQGYIKKDV
ECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LIKDVLVYLNNNYREKITLDQLSKKFRASVSYICHEFAKEYHISPINYVIQRRMTEAKFA
HHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE
LTNTESPLAEISWRVGYENVDHFAKLFMRHVGCSPNDYRKQFKNSLVEQAYLLPNT
ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNETELIYVKKGIARLIIDS
CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCC
SLYVAHADDIVVVERGRLHAVASDSNSPATTYTCALYGFCFPGWEENQLLQSHSCPVVSV
CEEEEECCCEEEEECCCEEEEECCCCCCCCEEHHHHHHCCCCCCCCHHHHHHCCCCEEEE
VQGKGVIKSIFNELSVLLPQGKNVLASSVYDAFAYTLTALYYENFKNAYRSEQGYIKKDV
ECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LIKDVLVYLNNNYREKITLDQLSKKFRASVSYICHEFAKEYHISPINYVIQRRMTEAKFA
HHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE
LTNTESPLAEISWRVGYENVDHFAKLFMRHVGCSPNDYRKQFKNSLVEQAYLLPNT
ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]