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The map label for this gene is nlpC [H]

Identifier: 16764694

GI number: 16764694

Start: 1422020

End: 1422484

Strand: Direct

Name: nlpC [H]

Synonym: STM1343

Alternate gene names: 16764694

Gene position: 1422020-1422484 (Clockwise)

Preceding gene: 16764693

Following gene: 16764695

Centisome position: 29.28

GC content: 48.6

Gene sequence:

>465_bases
ATGCGTTTTTGGCTTCTTGTTATCACAGCATTGTTCCTGGCAGGATGCAGTACTCATCGGGCACCGGCGCCAAATGCCAG
ATTATCAGACTCCATTACCGTCATTGCGGGTCTGAACGATCAGTTGCAGTCCTGGCGCGGTACGCCATACCGTTACGGCG
GCATGAGTCGCAGAGGCGTGGACTGTTCCGGCTTTGTGGTAGTCACTATGCGCGACAAGTTTGATTTGCAGTTGCCTCGT
GATACGCGTGAACAATCAAAAATCGGCACCAGAATCGATAAAGATGAATTGCTGCCCGGAGATTTGGTTTTCTTTAAAAC
CGGTTCGGGCGAAAGTGGTTTACATGTTGGTATTTACGATACAAATAATGAGTTTATTCATGCCTCTACCAGTCGTGGCG
TGATGCGTTCATCGCTGGATAATGTGTACTGGCGAAAAAACTTCTGGCAGGCACGGCGAATTTAA

Upstream 100 bases:

>100_bases
CCAATGCTCATTTCGGCCACTTAAGTAAAATCGTTTCTTGAAAAGCAGGTAATTTCGACGCTAAATTAATACCAAAATAA
AAACAGAGGATTGTTGCGGC

Downstream 100 bases:

>100_bases
CCTCGCAGACGATATAAATTTTATAGTCTATTTTTAACATATCGCCGGTTGAACTTATGACATCTGTTGTCATCATATAT
AATGATATAACCGTAGCATT

Product: lipoprotein

Products: NA

Alternate protein names: ORF-17 [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQSWRGTPYRYGGMSRRGVDCSGFVVVTMRDKFDLQLPR
DTREQSKIGTRIDKDELLPGDLVFFKTGSGESGLHVGIYDTNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI

Sequences:

>Translated_154_residues
MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQSWRGTPYRYGGMSRRGVDCSGFVVVTMRDKFDLQLPR
DTREQSKIGTRIDKDELLPGDLVFFKTGSGESGLHVGIYDTNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI
>Mature_154_residues
MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQSWRGTPYRYGGMSRRGVDCSGFVVVTMRDKFDLQLPR
DTREQSKIGTRIDKDELLPGDLVFFKTGSGESGLHVGIYDTNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=154, Percent_Identity=86.3636363636364, Blast_Score=271, Evalue=2e-74,
Organism=Escherichia coli, GI1788501, Length=127, Percent_Identity=47.244094488189, Blast_Score=129, Evalue=7e-32,
Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=35.5072463768116, Blast_Score=80, Evalue=6e-17,
Organism=Escherichia coli, GI1786421, Length=118, Percent_Identity=33.0508474576271, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 17460; Mature: 17460

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQSWRGTPYRYGGMSRRGV
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCEEECCCCCCCC
DCSGFVVVTMRDKFDLQLPRDTREQSKIGTRIDKDELLPGDLVFFKTGSGESGLHVGIYD
CCCCEEEEEEECCCEEECCCCCCHHHHHCCCCCHHHCCCCCEEEEEECCCCCCCEEEEEE
TNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI
CCCCEEEECCCCCHHHHHHHHHHHHHCHHHHCCC
>Mature Secondary Structure
MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQSWRGTPYRYGGMSRRGV
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCEEECCCCCCCC
DCSGFVVVTMRDKFDLQLPRDTREQSKIGTRIDKDELLPGDLVFFKTGSGESGLHVGIYD
CCCCEEEEEEECCCEEECCCCCCHHHHHCCCCCHHHCCCCCEEEEEECCCCCCCEEEEEE
TNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI
CCCCEEEECCCCCHHHHHHHHHHHHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]