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The map label for this gene is ycgE [H]

Identifier: 16764617

GI number: 16764617

Start: 1348191

End: 1349039

Strand: Direct

Name: ycgE [H]

Synonym: STM1266

Alternate gene names: 16764617

Gene position: 1348191-1349039 (Clockwise)

Preceding gene: 16764616

Following gene: 16764620

Centisome position: 27.76

GC content: 46.29

Gene sequence:

>849_bases
ATGGCTACTTTTAGTATTAGCGCAATGGCGGCGCAGTGTGGTGTCACAACAGCAAATATCAGGTCCTGGGAACGCTATGG
CCTGCTTCAACCTACCAAAGATGAAGCTGGCAATCGTTTTTATTGCATAGAAGATGCTATCAGAATACAGCATATTATCG
ACGCGTTAAGCAAAGGCTTTTCATTAAAAGAGATTAAACCTGCCCTCTATGGTGAAGAAACGCATTGCCGCTCGGGATGG
TTATTCTACCAGGAAGAGATTTTAGCGCAGTGTAGAAAATTCGAACCCGCCAAATTGCGAAAATTACTCTGGCGTTATGG
TCGGGAAATTCCGCCGTGTATCGTCATTGAGTCAATACTGCGTCCTTTACGGCTGTGGTTGTCCGCAGGCGATGATGATG
CACGCCGATTTGAAAAGGCATTACTGGATACTGCGATTATTGAATACGCCACGTTCCAGCTAAGTAGCGTACGAAAGGCG
CCAGCAGGCACAATGCTTATTGCTGCGTTTTCGCTGAACGACCCCATTGAGCTATGGCTGGAAACGATTAAATATTGTAG
TGAAGGTATGCGAGTTGAAGTCATCCCCTGGCAGGCGCCGATGCCCGATCTTTTATCAACGTCTTTCGAGCATATTGTTC
TGTGGCATGATGAGACATTAACTCCCGCGCAGGAAAATCTTATTCAGGCTTTAAAAGAATCGGGTAAATTTAGTCTTCAT
GTGAAAAATGGCTCAGGCTTAACATTACTGCCAGCCGTATATCGGCAGCATGAGATGCCAGAAAGCATGCAGCATGTTGC
ACCGCAAATCCATGCAAACGGCTACGAAAAATCAGGCACCGCACGTTGA

Upstream 100 bases:

>100_bases
TTTCCCGTGTAAATAGTAAGGTCATTGCTTAATAATGATTTGCTTCTGATGGCGTTTAGGTTCACTATGCTTTCTTACAT
CATCATGAGGCCAGACAGGC

Downstream 100 bases:

>100_bases
GGCATCTGCATTATTAACGAACAGGGGAGGAGTAAACCCCTCCCTTGTTTATACTCTTCATACTTCAAGTTGCTTATGTG
TTGGCTACGGATTACTCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGW
LFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA
PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR

Sequences:

>Translated_282_residues
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGW
LFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA
PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
>Mature_281_residues
ATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGWL
FYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAP
AGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLHV
KNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=238, Percent_Identity=31.5126050420168, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788448, Length=238, Percent_Identity=26.890756302521, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32009; Mature: 31878

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGF
CCEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHCCCCEEEEHHHHHHHHHHHHHHHCCC
SLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESIL
CHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAPAGTMLIAAFSLNDPIELWL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
ETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
HHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
EECCCCCCHHHHHHHHHCCHHHHHHHCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
ATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQHIIDALSKGF
CEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCHHCCCCEEEEHHHHHHHHHHHHHHHCCC
SLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKLLWRYGREIPPCIVIESIL
CHHHHCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKAPAGTMLIAAFSLNDPIELWL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
ETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLH
HHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
VKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
EECCCCCCHHHHHHHHHCCHHHHHHHCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]