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The map label for this gene is ycdZ [H]

Identifier: 16764494

GI number: 16764494

Start: 1227456

End: 1227986

Strand: Direct

Name: ycdZ [H]

Synonym: STM1138

Alternate gene names: 16764494

Gene position: 1227456-1227986 (Clockwise)

Preceding gene: 16764493

Following gene: 16764499

Centisome position: 25.27

GC content: 52.54

Gene sequence:

>531_bases
GTGTGCGTGATCTCATTAATGTGCCGCTTTTCTGTTATGATGCGCGCCATGAACATACTTCTTTCTATTGCTATCACGAC
GGGCATCCTTTCTGGAATATGGGGATGGGGGGCTGTCTCCCTGGGGTTACTAAGCTGGGCCGGTTTTTTAGGCTGTACGG
CTTATTTCGCCTGTCCGCAGGGCGGCTTTAAGGGATTGTTGATTTCCGCCTGTACGCTGTTAAGCGGTATGGTGTGGGCG
CTGGTCATTATTCACGGTAGCGCGTTGGCGCCGCATCTGGAAATTGTCAGTTACGTGTTGACGGGGATCGTGGCATTCCT
GATGTGTATCCAGGCAAAGCAGCTATTGCTTTCTTTTGTTCCGGGAACATTTATCGGCGCCTGCGCGACATTTGCAGGGC
AGGGTGACTGGCGGTTGGTATTACCGTCGCTGGCGCTGGGGCTAATCTTTGGCTATGCCATGAAAAATAGTGGGCTATGG
CTGGCATCACGCCGCGAGCAACATTCAGCGAATACGGCGGTCACAAAATAA

Upstream 100 bases:

>100_bases
GCGATAGGGGCCATGTGGGATGAACTTCAGGAAGAAGATGAAGAATAATGTGATGTAAATCACCCTTAACTGCAACGGGT
TTTACATCATTGCATAAAAT

Downstream 100 bases:

>100_bases
AAAAGCGTGGGGTTCTTCCCCACGCTTTGTCGTATTCATCAGGATTCTGGCGGTACTGACAGCTCACGGTATTTCACCAG
AATATCATTTTGCCTGTCCG

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MCVISLMCRFSVMMRAMNILLSIAITTGILSGIWGWGAVSLGLLSWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWA
LVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLW
LASRREQHSANTAVTK

Sequences:

>Translated_176_residues
MCVISLMCRFSVMMRAMNILLSIAITTGILSGIWGWGAVSLGLLSWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWA
LVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLW
LASRREQHSANTAVTK
>Mature_176_residues
MCVISLMCRFSVMMRAMNILLSIAITTGILSGIWGWGAVSLGLLSWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWA
LVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLW
LASRREQHSANTAVTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC [H]

Homologues:

Organism=Escherichia coli, GI87081825, Length=163, Percent_Identity=86.5030674846626, Blast_Score=273, Evalue=6e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009476 [H]

Pfam domain/function: PF06496 DUF1097 [H]

EC number: NA

Molecular weight: Translated: 18680; Mature: 18680

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVISLMCRFSVMMRAMNILLSIAITTGILSGIWGWGAVSLGLLSWAGFLGCTAYFACPQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGFKGLLISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRREQHSANTAVTK
CHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCC
>Mature Secondary Structure
MCVISLMCRFSVMMRAMNILLSIAITTGILSGIWGWGAVSLGLLSWAGFLGCTAYFACPQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGFKGLLISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTGIVAFLMCIQAKQLLLSFV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLWLASRREQHSANTAVTK
CHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609; 9457880 [H]