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The map label for this gene is ymdF [H]

Identifier: 16764478

GI number: 16764478

Start: 1206204

End: 1206371

Strand: Direct

Name: ymdF [H]

Synonym: STM1121

Alternate gene names: 16764478

Gene position: 1206204-1206371 (Clockwise)

Preceding gene: 16764475

Following gene: 16764479

Centisome position: 24.83

GC content: 52.38

Gene sequence:

>168_bases
ATGGCAAACCATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAAGCAGGTCGTAAAGGTGGTCA
GCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCATCCGAAGCAGGCAAAAAAGGGGGCAAAAGCAGTAACCGTA
ATAGCTAG

Upstream 100 bases:

>100_bases
TGTTACGCGGCGTTACTGATGATATCGTTCATACGCTGCGCGAGGAGATACTCCTCATTACCTATGCAATATGATGTCTA
ATCTATGACGGAGGTCAGTA

Downstream 100 bases:

>100_bases
CCTGCGTCACAACAGCAAGACGCTGAGCGTTTCGCGCTAAAAAGTGTCATGCGCCACCGCCGCCGGATTTCCGGCGGTTT
TTTTGTTTATAAGCCGGATT

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 55; Mature: 54

Protein sequence:

>55_residues
MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGKKGGKSSNRNS

Sequences:

>Translated_55_residues
MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGKKGGKSSNRNS
>Mature_54_residues
ANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGKKGGKSSNRNS

Specific function: Unknown

COG id: COG3729

COG function: function code R; General stress protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the con-10 family [H]

Homologues:

Organism=Escherichia coli, GI87081817, Length=51, Percent_Identity=98.0392156862745, Blast_Score=97, Evalue=1e-22,
Organism=Escherichia coli, GI87081862, Length=43, Percent_Identity=93.0232558139535, Blast_Score=82, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019626 [H]

Pfam domain/function: PF10685 KGG [H]

EC number: NA

Molecular weight: Translated: 5744; Mature: 5613

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGKKGGKSSNRNS
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGKKGGKSSNRNS
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]