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The map label for this gene is hpaA [C]

Identifier: 16764466

GI number: 16764466

Start: 1195422

End: 1196318

Strand: Direct

Name: hpaA [C]

Synonym: STM1108

Alternate gene names: 16764466

Gene position: 1195422-1196318 (Clockwise)

Preceding gene: 16764465

Following gene: 16764467

Centisome position: 24.61

GC content: 52.06

Gene sequence:

>897_bases
ATGTGCCAACGTGCGATCGCCAATATTGATATCAGCAAAGAGTATGACGAAAGCATGGGCAGTAACGATGTGCATTATCA
GTCGTTTGCTCGTATGGCGGATTTCTTTGGTCGTGATATGCAGGCGCATCGCCACGACCAGTTTTTTCAAATGCACTTTC
TTGATACCGGGCAGATTGAGCTACAGCTCGACGATCATCGCTATTCGGTGCAGGCGCCGCTATTTGTGCTTACGCCGCCC
TCGGTGCCGCATGCTTTTATTACCGAATCGGATAGCGATGGCCATGTTCTGACGGTACGCGAAGAGCTGGTTTGGCCGCT
GCTGGAAGTGCTTTATCCCGGCACCAGAGAGGCCTTTGGCCTGCCGGGAATCTGCCTGTCGCTGGCGGATAAACCCAACG
AGCTGGCGGCGCTCAAACATTACTGGCAGCTAATTGAGCGGGAGTCCACGGAACAACTGGCTGGCTGCGAACATACCCTG
GTGCTACTGGCGCAGGCGGTATTTACCTTGCTGTTGCGTAATGCGAAGCTGGACGATCACGCCGCAACCGGGATGCGCGG
TGAACTGAAACTTTTTCAGCGCTTTACCCTGTTAATTGACAACCACTTCCATCAGCACTGGACGGTGCCCGATTATGCCT
GCGAGCTGCATATTACCGAATCTCGTTTGACCGATATTTGCCGACGTTTTGCTAATCGCCCGCCTAAACGCCTGATTTTT
GATCGGCAATTACGCGAGGCGAAACGACTGCTGCTTTTTTCCGACAATGCTGTCAACGAGATCGCCTGGCAATTAGGTTT
TAAAGATCCGGCTTATTTTGCCCGTTTCTTTAATCGCCTTGCTGGCTGTTCTCCTTCGCAGTTTCGCCAACGTGAAGTTC
CCTCTTTTCTCAACTAA

Upstream 100 bases:

>100_bases
ACTCTGGTTTGTCGCTTCTCTGTTAGTCGTCGGCGCCGCCATTATCTGGCTTATTCCCATGAAAGCATCGCGTCCGCGCG
CCACCCCTTGAGGAGAAACT

Downstream 100 bases:

>100_bases
GAAGAGTAAAAACATGATGAAAAAAAGCGTCGCTATGCTGGCGGTGTGTATGCTGGCGCAAAGCCACCTTGCCATTGCTG
CCGGTACTCCTGCGCCTCAA

Product: 4-hydroxyphenylacetate catabolism

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; PobR Regulator; AraC-Family Transcriptional Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator Arac Family; Helix-Turn-Helix AraC Type; Transcriptional Regulator Pobr Arac Family Protein; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator Protein; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPP
SVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFGLPGICLSLADKPNELAALKHYWQLIERESTEQLAGCEHTL
VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN

Sequences:

>Translated_298_residues
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPP
SVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFGLPGICLSLADKPNELAALKHYWQLIERESTEQLAGCEHTL
VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN
>Mature_298_residues
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPP
SVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFGLPGICLSLADKPNELAALKHYWQLIERESTEQLAGCEHTL
VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34550; Mature: 34550

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIE
CCCHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHEEEEEECCCEEE
LQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFG
EEECCCEEEEECCEEEECCCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCHHCC
LPGICLSLADKPNELAALKHYWQLIERESTEQLAGCEHTLVLLAQAVFTLLLRNAKLDDH
CCHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCH
AATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHH
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN
HHHHHHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQMHFLDTGQIE
CCCHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHEEEEEECCCEEE
LQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREELVWPLLEVLYPGTREAFG
EEECCCEEEEECCEEEECCCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCHHCC
LPGICLSLADKPNELAALKHYWQLIERESTEQLAGCEHTLVLLAQAVFTLLLRNAKLDDH
CCHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCH
AATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIF
HHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHH
DRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN
HHHHHHHHHEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA