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The map label for this gene is pipD [H]

Identifier: 16764452

GI number: 16764452

Start: 1180638

End: 1182107

Strand: Reverse

Name: pipD [H]

Synonym: STM1094

Alternate gene names: 16764452

Gene position: 1182107-1180638 (Counterclockwise)

Preceding gene: 16764453

Following gene: 16764451

Centisome position: 24.34

GC content: 48.64

Gene sequence:

>1470_bases
ATGAAAAAGTATCTTGCATTCGCCGTTACGCTGCTGGGTATGGGTAAAGTCATCGCCTGTACTACCCTTTTGGTAGGCAA
TCAGGCTTCGGCTGACGGCTCCTTCATTATCGCGCGCAACGAAGATGGCTCGGCAAATAACGCCAAGCATAAGGTTATTC
ATCCCATCGCGTTTCATCAACAAGGCGAGTATAAAGCACATCGGAACAATTTTAGCTGGCCGCTTCCGGAGACAGCGATG
CGCTATACGGCGATTCATGACTTTGATACTAACGATAACGCCATGGGTGAAGCCGGTTTCAATTCGGCGGGCGTCGGAAT
GAGCGCAACGGAAACCATTTATAACGGCAGAGCGGCGCTGGCTGCCGATCCTTACGTGACAAAAACGGGAATCACGGAAG
ACGCCATTGAGTCCGTGATCCTGCCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAATTACTGGGAGATATTATTGAACAA
AAAGGCGCGGGCGAAGGTTTCGGCGTCGCGTTTATTGATAGCAAAGAGATATGGTATCTGGAGACGGGAAGCGGTCATCA
ATGGCTGGCAGTACGACTTCCGGCAGATAGCTATTTCGTTTCCGCCAATCAGGGACGTTTACGCCATTACGATCCGAATG
ATAACGCGAATTATATGGCGTCACCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGATTATATGATCCGGCCCGCGGCGAA
TTCGACTTTCATCAAGCCTATTCGCAGGATAACAAAAACGATACCACCTATAATTATCCGCGCGTCTGGACGCTACAACA
CCAGTTTAATCCGCATCTGGATACGGTCGTTAGCGAAGGGGAAACATTTCCTGTTTTTTTAACGCCAATAACGAAGATCA
GCGTGGCGGCAGTAAAAAACGCGCTACGCAATCACTATCAGGGAACGTCGCACGACCCTTATGCCAGTCATAATCCACAA
GAACCATGGCGACCTATATCCGTTTTTCGTACCCAGGAGTCACATATTTTACAGGTCAGACCGAAATTACCGCAGGCTAT
CGGCAACGTAGAATACATCGCCTATGGAATGCCATCTCTTAGCGTCTATCTCCCCTATTATCAGGGGATGCGTCATTATC
AACCCGGAGATGATAAAGGAACCGATCGGGCGAGCAACGACTCTACCTACTGGACATTCCGCACGCTGCAAACGCTGGTT
ATGCAGGACTACAATGCGTTTGCGCCAGATGTGCAACACGCCTGGAAAACATTTGAACAGCAAACAGCTAAGCAGCAGTA
TAAGATGGAGCAGAGCTATCTGAGATTATATGCGTCGCATCCGAAAGAAGCGCAACGCTTACTGCAAAATTTTGAAGATA
AAACGATGCAAAATGCGCAGACGCTCGCCCGTCGCCTGACCAATAATATTATTACGACAATGACTTACCGTACAGATATG
AAATATCACTTTTCAAGTACGCAGCCATAA

Upstream 100 bases:

>100_bases
ATAAAGGATGCCGGCAAAGAATATTGCTGGCTCGATCACTTTCTCGGTTTCCAATCCAGGGTCAATTCATCCCATAATGC
GTTATTCAGTGGGAACCTTT

Downstream 100 bases:

>100_bases
ATTTAATGACAATCTATTAGCCACTCATACACAATAAGATAAAGCGGTACCAGAATTAGCCAGATATAAAAGACAATAAT
TATTATGGATTCATAGAGAG

Product: pathogenicity island-encoded protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPETAM
RYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQ
KGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHNPQ
EPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLV
MQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
KYHFSSTQP

Sequences:

>Translated_489_residues
MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPETAM
RYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQ
KGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHNPQ
EPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLV
MQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
KYHFSSTQP
>Mature_489_residues
MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPETAM
RYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQ
KGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHNPQ
EPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLV
MQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
KYHFSSTQP

Specific function: Unknown

COG id: COG4690

COG function: function code E; Dipeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C69 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005322 [H]

Pfam domain/function: PF03577 Peptidase_C69 [H]

EC number: NA

Molecular weight: Translated: 55148; Mature: 55148

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
CCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECEEEECC
QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
CCCCHHHCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEE
AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
ECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEE
ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
ECCCCCEEEEEEECCCCEEEECCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCCCC
FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
CHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHH
ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
HHHHHCCCCCCCCCCCCCCCCCCCCHHEEECCCCCEEEECCHHHHHHCCCEEEEECCCCE
SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
EEEECHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
KYHFSSTQP
EEECCCCCC
>Mature Secondary Structure
MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPIAFHQ
CCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECEEEECC
QGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAAL
CCCCHHHCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEE
AADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQKGAGEGFGVAFIDSKEIWYL
ECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEE
ETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDPARGE
ECCCCCEEEEEEECCCCEEEECCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCCCC
FDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKN
CHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHH
ALRNHYQGTSHDPYASHNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSL
HHHHHCCCCCCCCCCCCCCCCCCCCHHEEECCCCCEEEECCHHHHHHCCCEEEEECCCCE
SVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTLQTLVMQDYNAFAPDVQHAWKTFEQ
EEEECHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
QTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTYRTDM
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
KYHFSSTQP
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9723926 [H]