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The map label for this gene is arrD [H]

Identifier: 16764388

GI number: 16764388

Start: 1115210

End: 1115662

Strand: Direct

Name: arrD [H]

Synonym: STM1028

Alternate gene names: 16764388

Gene position: 1115210-1115662 (Clockwise)

Preceding gene: 16764387

Following gene: 16764389

Centisome position: 22.96

GC content: 53.2

Gene sequence:

>453_bases
ATGATGAGAATCAGTGAAAAAGGCATTACCCTAATCAAAGAGTTTGAAGGTTGTAGCCTGACAGCTTATCCGGACCCGGG
AACGGGGGGAGATCCCTGGACGATTGGTTATGGCTGGACCCACTCTGTTGACGGTAAGCCAGTTAAGCCCGGAATGATGA
TTGACGAGGCTACTGCCGAGCGCTTGCTTAACACTGGTTTAGTCGGTTATGAAAATGATGTGTCCAGACTGGTTAAGGTC
AAGTTGACGCAAGGCCAGTTTGATGCGCTGGTGTCGTTCGCGTACAACCTCGGCGCCCGGACATTATCCTCATCAACTCT
GCTGCGGAAGCTAAACGCTGGTGATTACGCTGGCGCCGCTGATGAGTTCCTGCGCTGGAATAAGGCTGGTGGCAAAGTAC
TGAACGGGCTTACCCGTCGGCGTGAGGCGGAGCGTGCTCTGTTCCTGTCATGA

Upstream 100 bases:

>100_bases
GTTTCCATTTCGCCTTTCGTTGGCGGAATTATTGGCTTTGTCGGTGTGGACAAGCTGCGCGAAATCGCAATTAGCGCACT
CAAAAAACGTGCAGGGGTTA

Downstream 100 bases:

>100_bases
TGTTCAACTGGAAAACGATGTTTGTTGGCCTGTTGCTTGTCTCGCTAATTGTTGCCGGTCGGCTGGCAAATCACTACCGA
AATAACGCCATCACCTACAA

Product: lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKV
KLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS

Sequences:

>Translated_150_residues
MMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKV
KLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS
>Mature_150_residues
MMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKV
KLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=135, Percent_Identity=39.2592592592593, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 16361; Mature: 16361

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAE
CCEECCCCCEEEEECCCCEEEECCCCCCCCCCEEECCCEEECCCCCCCCCCCEEHHHHHH
RLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAA
HHHHCCCCCCCHHHHHHEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCH
DEFLRWNKAGGKVLNGLTRRREAERALFLS
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAE
CCEECCCCCEEEEECCCCEEEECCCCCCCCCCEEECCCEEECCCCCCCCCCCEEHHHHHH
RLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAA
HHHHCCCCCCCHHHHHHEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCH
DEFLRWNKAGGKVLNGLTRRREAERALFLS
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]