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The map label for this gene is sodC1 [H]

Identifier: 16764286

GI number: 16764286

Start: 994962

End: 995486

Strand: Reverse

Name: sodC1 [H]

Synonym: STM0924

Alternate gene names: 16764286

Gene position: 995486-994962 (Counterclockwise)

Preceding gene: 16764290

Following gene: 16764275

Centisome position: 20.49

GC content: 48.57

Gene sequence:

>525_bases
ATGAACAAAAAGTTAATGACACTTGCTGTATTTTTATTCAGTAGTGCAGCCTCAGCAGCAAGTACCGACGCAACGGTTAA
CCTTGTAAATGCCAATGGCACAGGTCAAAAGATCGGCAATATTACAATTACCGAAACAGAATATGGCTTGTTATTCACCC
CACATTTGTCCTCACTTCCAGCCGGTATTCATGGGTTTCATATCCACGAGAACGGAAGCTGTGATGCTGGCATGAAGGAC
GGTAAACCTGTCGCAGCACTTGCTGCCGGAGGGCACCTTGACCCTCAGCACACAAATAAACATCTCGGTCCGTATAATCC
TGAAGGTCATCTCGGTGATCTTCCGGCGCTGTATGTAAATCAGGCAGGTAACGCTGATTATCCGGTTCTGGCCCCACGCC
TCAAATCAATCAGTCAGGTCAAAGGCCATGCCATCATGATCCATACCGGCGGTGACAACCATGAAGATCATCCCAACCCG
CTTGGGGGCGGTGGTGCACGAATCGCCTGTGGCGTTATAAAATAA

Upstream 100 bases:

>100_bases
TCATCAATAGATATTAGCAATAACAACAATCGAATTAATTTGACTTTAATGTCTTTACTATCAACCTGATAAAAACCACA
ACCACAACAATGGAGTTAAG

Downstream 100 bases:

>100_bases
AATTCACTCTGTGAGGCACTGTTCCACGGGCCGTCCATGACCGGCGGCTCGTTTTATCGACCGATGATCACCACCTGCCC
GCCGCCACCTTCATCCCGGG

Product: CuZn superoxide dismutase

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITITETEYGLLFTPHLSSLPAGIHGFHIHENGSCDAGMKD
GKPVAALAAGGHLDPQHTNKHLGPYNPEGHLGDLPALYVNQAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNP
LGGGGARIACGVIK

Sequences:

>Translated_174_residues
MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITITETEYGLLFTPHLSSLPAGIHGFHIHENGSCDAGMKD
GKPVAALAAGGHLDPQHTNKHLGPYNPEGHLGDLPALYVNQAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNP
LGGGGARIACGVIK
>Mature_174_residues
MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITITETEYGLLFTPHLSSLPAGIHGFHIHENGSCDAGMKD
GKPVAALAAGGHLDPQHTNKHLGPYNPEGHLGDLPALYVNQAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNP
LGGGGARIACGVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=174, Percent_Identity=55.7471264367816, Blast_Score=195, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17996; Mature: 17996

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITITETEYGLLFTPHLSSLP
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEECCEEEEECCCCEEECCCCCCCC
AGIHGFHIHENGSCDAGMKDGKPVAALAAGGHLDPQHTNKHLGPYNPEGHLGDLPALYVN
CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
QAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNPLGGGGARIACGVIK
CCCCCCCCEECHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITITETEYGLLFTPHLSSLP
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEECCEEEEECCCCEEECCCCCCCC
AGIHGFHIHENGSCDAGMKDGKPVAALAAGGHLDPQHTNKHLGPYNPEGHLGDLPALYVN
CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
QAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNPLGGGGARIACGVIK
CCCCCCCCEECHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]