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The map label for this gene is intQ [H]

Identifier: 16764254

GI number: 16764254

Start: 962612

End: 963937

Strand: Reverse

Name: intQ [H]

Synonym: STM0893

Alternate gene names: 16764254

Gene position: 963937-962612 (Counterclockwise)

Preceding gene: 16764255

Following gene: 16764253

Centisome position: 19.84

GC content: 47.36

Gene sequence:

>1326_bases
ATGACGCTCTTGGACGCAGGAGGAATTATGGCTAAACCAGCCTATCCAACCGGCGTTGAAAAACACGGAGACAAACTCCG
TATCTGCTTCCACTACAAGGGGAGGCGTGTTCGTGAAAATCTGGGGGTGCCTGATACCCCCAAAAATCGCAAGGTGGCCG
GAGAACTCAGGGCTTCGGTCTGCTTTGCAATCAAGGTAGGTACTTTCGACTATGCGGCGCAATTCCCTGACTCACCGAAC
CTGAAACTATTCGGGATTGTGAATAAGGAAATCACAGTGGCGGAACTGGCGGATAAGTGGCTAAAGCTTAAAGAGATGGA
GATATCCAAAAACACCATGCTTCGTTATGAGTCGATCATAAAAATCAGCGTTTCTTTATTAGGAGGCCGGGTTCTCGCTT
CTTCTGTAACCCAGGAAGATTTACTCTTTTTCAGAAAGGAGTTAATGACCGGCCATCATATTACCAGGCCAGGCCGCGAG
TTAGCGCCAAAAGGAAGAAGTGTGGCAACTGTAAACTCCTATCTGGGGGTTGTTTCTGGATTATTTCAGTTTGCTGCCCG
TAACGGTTACATTCCACAAAACCCATTCAATGGAATAACTATGTTGAAGCGTGCCAAAGCTGAACCAGATCCACTTTCAC
GTGAAGAATTTGCACGTCTTATTGACGCCTGCCATCACCAGCAAATTAAAAACCTTTGGTCACTGGCTGTTTATACTGGT
ATGCGGCATGGGGAATTATGCGCGCTGGCATGGGAAGATATCGATCTCAAAGCGGGGACTTTGATTGTCAGGAGAAACTA
TACCCAGGCGAAAGAGTTCACCCTGCCGAAAACCCAGGCAGGAACCGACAGGGTGATACATCTTGTGCAGCCAGCAATTG
ATGCTTTAAAAAGTCAGGCCTCTTTCACGAAGCTGAGCAAACAGCACAAAATTGAAGTAAAGCTGCGCGAATACGGTCGT
ACAAAAACTCATTCCTGCACCTTTGTCTTCAATCCGCAAATTACCGATCGCTCAGGTAAATCCAAAGCACATTATGCTGC
ACCTTCCCTGAACAGGATATGGGAATCTGCATTGAGACGCGCCGGGCTGCGACACAGGAAAGCATACCAGTCCCGACATA
CCTATGCATGCTGGGCGCTTGCCGCTGGCGCGAACCCGAACTTTATTGCTTCACAAATGGGGCACTCAAACGCTCAGATG
GTCTATACAGTATATGGAGCATGGATGGCTGATAATAACCAGTCACAAGTAGATATACTGAATCAACAACTGGCATCTAC
TGCCCCAGGAGTGCCCCAAAAAGATAACATGCTTAATTTTATTTAG

Upstream 100 bases:

>100_bases
TGAATGCCTGTACCACCTGCCAACGATAAACAGGTGGATTAGAAATATGCCCGATCCGGATGTCGATCTTTGACTTATTT
TCTGAAGAGAGGGTAATCTG

Downstream 100 bases:

>100_bases
ATAAAACAAGATGTTAAGTGGTTATGCAATCACTGAAAGGATATAATTGATTATCGTAGATCGGTTTTTGCTCGATCGCC
TATAAGGAAATCATCATGCG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MTLLDAGGIMAKPAYPTGVEKHGDKLRICFHYKGRRVRENLGVPDTPKNRKVAGELRASVCFAIKVGTFDYAAQFPDSPN
LKLFGIVNKEITVAELADKWLKLKEMEISKNTMLRYESIIKISVSLLGGRVLASSVTQEDLLFFRKELMTGHHITRPGRE
LAPKGRSVATVNSYLGVVSGLFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFARLIDACHHQQIKNLWSLAVYTG
MRHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLPKTQAGTDRVIHLVQPAIDALKSQASFTKLSKQHKIEVKLREYGR
TKTHSCTFVFNPQITDRSGKSKAHYAAPSLNRIWESALRRAGLRHRKAYQSRHTYACWALAAGANPNFIASQMGHSNAQM
VYTVYGAWMADNNQSQVDILNQQLASTAPGVPQKDNMLNFI

Sequences:

>Translated_441_residues
MTLLDAGGIMAKPAYPTGVEKHGDKLRICFHYKGRRVRENLGVPDTPKNRKVAGELRASVCFAIKVGTFDYAAQFPDSPN
LKLFGIVNKEITVAELADKWLKLKEMEISKNTMLRYESIIKISVSLLGGRVLASSVTQEDLLFFRKELMTGHHITRPGRE
LAPKGRSVATVNSYLGVVSGLFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFARLIDACHHQQIKNLWSLAVYTG
MRHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLPKTQAGTDRVIHLVQPAIDALKSQASFTKLSKQHKIEVKLREYGR
TKTHSCTFVFNPQITDRSGKSKAHYAAPSLNRIWESALRRAGLRHRKAYQSRHTYACWALAAGANPNFIASQMGHSNAQM
VYTVYGAWMADNNQSQVDILNQQLASTAPGVPQKDNMLNFI
>Mature_440_residues
TLLDAGGIMAKPAYPTGVEKHGDKLRICFHYKGRRVRENLGVPDTPKNRKVAGELRASVCFAIKVGTFDYAAQFPDSPNL
KLFGIVNKEITVAELADKWLKLKEMEISKNTMLRYESIIKISVSLLGGRVLASSVTQEDLLFFRKELMTGHHITRPGREL
APKGRSVATVNSYLGVVSGLFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFARLIDACHHQQIKNLWSLAVYTGM
RHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLPKTQAGTDRVIHLVQPAIDALKSQASFTKLSKQHKIEVKLREYGRT
KTHSCTFVFNPQITDRSGKSKAHYAAPSLNRIWESALRRAGLRHRKAYQSRHTYACWALAAGANPNFIASQMGHSNAQMV
YTVYGAWMADNNQSQVDILNQQLASTAPGVPQKDNMLNFI

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=411, Percent_Identity=43.30900243309, Blast_Score=339, Evalue=2e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49356; Mature: 49225

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLDAGGIMAKPAYPTGVEKHGDKLRICFHYKGRRVRENLGVPDTPKNRKVAGELRASV
CEEECCCCEEECCCCCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHEEE
CFAIKVGTFDYAAQFPDSPNLKLFGIVNKEITVAELADKWLKLKEMEISKNTMLRYESII
EEEEEECCCHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
KISVSLLGGRVLASSVTQEDLLFFRKELMTGHHITRPGRELAPKGRSVATVNSYLGVVSG
HHHHHHHCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEHHHHHHHHHHH
LFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFARLIDACHHQQIKNLWSLAVYTG
HHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
MRHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLPKTQAGTDRVIHLVQPAIDALKSQA
CCCCCEEEEEECCCCCCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SFTKLSKQHKIEVKLREYGRTKTHSCTFVFNPQITDRSGKSKAHYAAPSLNRIWESALRR
HHHHHHHCCEEEEEEHHCCCCCCCEEEEEECCCEECCCCCCCCEECCCCHHHHHHHHHHH
AGLRHRKAYQSRHTYACWALAAGANPNFIASQMGHSNAQMVYTVYGAWMADNNQSQVDIL
CCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHH
NQQLASTAPGVPQKDNMLNFI
HHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLLDAGGIMAKPAYPTGVEKHGDKLRICFHYKGRRVRENLGVPDTPKNRKVAGELRASV
EEECCCCEEECCCCCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHEEE
CFAIKVGTFDYAAQFPDSPNLKLFGIVNKEITVAELADKWLKLKEMEISKNTMLRYESII
EEEEEECCCHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
KISVSLLGGRVLASSVTQEDLLFFRKELMTGHHITRPGRELAPKGRSVATVNSYLGVVSG
HHHHHHHCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEHHHHHHHHHHH
LFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFARLIDACHHQQIKNLWSLAVYTG
HHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
MRHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLPKTQAGTDRVIHLVQPAIDALKSQA
CCCCCEEEEEECCCCCCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
SFTKLSKQHKIEVKLREYGRTKTHSCTFVFNPQITDRSGKSKAHYAAPSLNRIWESALRR
HHHHHHHCCEEEEEEHHCCCCCCCEEEEEECCCEECCCCCCCCEECCCCHHHHHHHHHHH
AGLRHRKAYQSRHTYACWALAAGANPNFIASQMGHSNAQMVYTVYGAWMADNNQSQVDIL
CCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHH
NQQLASTAPGVPQKDNMLNFI
HHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]