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The map label for this gene is yadU

Identifier: 16763591

GI number: 16763591

Start: 236264

End: 237103

Strand: Direct

Name: yadU

Synonym: STM0201

Alternate gene names: 16763591

Gene position: 236264-237103 (Clockwise)

Preceding gene: 16763590

Following gene: 16763593

Centisome position: 4.86

GC content: 49.76

Gene sequence:

>840_bases
ATGAAAATAATACGGACTTTATTTTTGCTGCTGATTGCCGTTTATGGCAGTTCGGTAGTGGCCAAACCCATGCTGAAAGC
GACGTTTTCAAGCACCACGATGTATTATGGTATTGGCCCTAATAGCGACAAATCTATTGTGGCGGAGGTGACGATAGCGA
CTCCGGAGGGAGTGTACTATGGCTCCTGGAACCTTTCGGGACATCGTAAAGGAGAAACGCTAACCGCAGACTCCTGGTCT
GGGCCAGAACCTGCGCCGAAGGTTGTATTGAAGGATTTTGATAACACTGTTTCGCGATCTGCGTGCAAGAATCTTCCCTC
GAACTGGAGGGGGTGTGGTTCTTTTACCCTGGAGATTACGGTACAAAGCGATGATTATGGTTGCCCCTGGCTGGCGTCGA
GCCATATCGTTGCTACCACTTTTATCACTAACGAAACGTATTCCCCGCCGGATACGCGCAGTTCAGTTTGCCCGAAAGTT
CCCGTTGATACTTTTGATATCTCCTGGGATGCGAACGTTTCGAAACAGAAAACAACCCTCATGCTTGATGCCACCGGTGG
CACGGTGAATCGCACGTTACATACCTATTTGATGGAGGGGGGAAAACTGTGCGATGGCAGCAAATTTGACAACCGTGGCG
CTTATTGCCGTTTTGTCTCATCGGGTATTACGCTCAATGTGCTGGGCTGCGACCAGTCGAGCGTCACGACCAGCGCCGTT
GATCATCCGATAACCGATGTTGAGCTTCATGACATTAATGTAGCGGTGAACACCCGCAACATTGGCTCCGGGCAGTTCAC
GTCGACCTGTAGCTTCCAGTATATTATTGATGAGCTTTAG

Upstream 100 bases:

>100_bases
ATACGCTAAACCTGAATGCCTGGGTACAACGTCTTCCCGGCGAGGACCTGATTCCGGGAAGGTTCTCTGCAAGTGCGCTA
GCCACATTTGAGTATTTATA

Downstream 100 bases:

>100_bases
GGGGGCTGGGTGTTTGGCGAAGATTCACGCTAACCTGGTATGAACCAAAAAAAAACCGGGTGGCGGCTTCGCCTTACCCG
GCCTACGTTGTTTCTGGACG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDKSIVAEVTIATPEGVYYGSWNLSGHRKGETLTADSWS
GPEPAPKVVLKDFDNTVSRSACKNLPSNWRGCGSFTLEITVQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKV
PVDTFDISWDANVSKQKTTLMLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRFVSSGITLNVLGCDQSSVTTSAV
DHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYIIDEL

Sequences:

>Translated_279_residues
MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDKSIVAEVTIATPEGVYYGSWNLSGHRKGETLTADSWS
GPEPAPKVVLKDFDNTVSRSACKNLPSNWRGCGSFTLEITVQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKV
PVDTFDISWDANVSKQKTTLMLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRFVSSGITLNVLGCDQSSVTTSAV
DHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYIIDEL
>Mature_279_residues
MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDKSIVAEVTIATPEGVYYGSWNLSGHRKGETLTADSWS
GPEPAPKVVLKDFDNTVSRSACKNLPSNWRGCGSFTLEITVQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKV
PVDTFDISWDANVSKQKTTLMLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRFVSSGITLNVLGCDQSSVTTSAV
DHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYIIDEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfcO

Homologues:

Organism=Escherichia coli, GI87082086, Length=291, Percent_Identity=37.4570446735395, Blast_Score=193, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YADU_SALTY (O87663)

Other databases:

- EMBL:   AF093503
- EMBL:   AE006468
- RefSeq:   NP_459206.1
- GeneID:   1251719
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0201
- NMPDR:   fig|99287.1.peg.199
- HOGENOM:   HBG467155
- OMA:   DISWDAN
- ProtClustDB:   CLSK880357
- BioCyc:   STYP99287:STM0201-MONOMER
- InterPro:   IPR021407

Pfam domain/function: PF11245 DUF2544

EC number: NA

Molecular weight: Translated: 30262; Mature: 30262

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDKSIVAEVTIATPEGVYY
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCCEEE
GSWNLSGHRKGETLTADSWSGPEPAPKVVLKDFDNTVSRSACKNLPSNWRGCGSFTLEIT
EEECCCCCCCCCEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEEE
VQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKVPVDTFDISWDANVSKQKTTL
EECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEE
MLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRFVSSGITLNVLGCDQSSVTTSAV
EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCHHHH
DHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYIIDEL
CCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDKSIVAEVTIATPEGVYY
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCCEEE
GSWNLSGHRKGETLTADSWSGPEPAPKVVLKDFDNTVSRSACKNLPSNWRGCGSFTLEIT
EEECCCCCCCCCEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEEEE
VQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKVPVDTFDISWDANVSKQKTTL
EECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEE
MLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRFVSSGITLNVLGCDQSSVTTSAV
EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCHHHH
DHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYIIDEL
CCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10482505; 11677609