| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is gcd [H]
Identifier: 16763559
GI number: 16763559
Start: 198220
End: 200610
Strand: Reverse
Name: gcd [H]
Synonym: STM0169
Alternate gene names: 16763559
Gene position: 200610-198220 (Counterclockwise)
Preceding gene: 16763561
Following gene: 16763557
Centisome position: 4.13
GC content: 57.72
Gene sequence:
>2391_bases ATGGCAGAAAATAACGCACGATCGCCACGATTACTCGTGACGCTGACGGCCCTCTTTGCAGCACTTTGTGGGCTGTATCT TCTTATCGGAGGTGTCTGGCTGGTTGCTATTGGCGGTTCCTGGTACTACCCCATCGCGGGCCTCGTGATGCTGGTTGTGG CCGGATTGCTATGGCGCAGTAAACGTGCCGCACTGTGGCTGTATGCCGCCCTGCTGCTGGCGACAATGATTTGGGGCGTG TGGGAAGTCGGGTTCGACTTCTGGGCGCTCACGCCGCGTAGCGATATCCTGGTGTTTTTCGGCATCTGGCTAATATTACC GTTTGTCTGGCATCGGCTGGTGGTTCCTTCCAGTGGCGCAGTGGCGGCGCTGGTCGTGGCGTTGCTGATTAGCGGCGGCA TTCTGACCTGGGCCGGCTTCAACGACCCGCAGGAGATCAACGGTACGCTTCGCGCCGACGCCACGCCCGCCGCAACAAGT TCGTCGATCGCCGACGAAGACTGGCCGGCCTATGGGCGCAATCAGGAAGGCCAACGCTATTCGCCGCTGAAACAGATCAC TGCGGATAACGTTCACCAACTGAAAGAAGCGTGGGTCTTCCGCACCGGCGATCTGAAACAGCCCAACGATCCGGGTGAAA TCACCAACGAAGTGACCCCGATAAAAGTCGGCGATACGCTTTATCTGTGTACAGCTCACCAGCGTCTGTTCGCGCTGGAC GCCGCCAGCGGTAAAGAGAAGTGGCATTTTGATCCTCAGTTGAAGACCGATTCGTCTTTCCAGCATGTGACCTGCCGCGG CGTCTCTTATCATGAGGCCAAAGCGGATACCGCCTCGCCGGAGGTCATCGCCGACTGTCCGCGCCGTATTATCCTCCCGG TCAACGACGGTCGCCTTTTCGCGGTGAATGCCGAAACCGGCAAGCTGTGTGAAACCTTCGCCAACAAAGGCGTCCTGAAT CTGCAAACCAATATGCCGGATACCACACCGGGACTGTATGAACCGACGTCGCCGCCGATTATCACCGATAAAACAATTGT CATTGCCGGTTCGGTCACGGATAACTTCTCTACCCGCGAAACGTCCGGCGTTATCCGAGGTTTTGATGTTAATAGCGGTA AACTCATGTGGGCCTTCGATCCGGGGGCGAAAGATCCGAACGCGATTCCAGCCGATGAGCACGCTTTTACCTTTAACTCG CCGAACTCCTGGGCGCCTGCCGCCTATGATGCGAAACTGGATCTGGTCTATCTGCCGATGGGCGTGACCACGCCGGATAT CTGGGGCGGTAACCGCACGCCGGAGCAGGAGCGTTATGCCAGCTCCATCCTGGCGCTGAATGCCACCACCGGGAAACTGG CCTGGAGTTATCAGACCGTCCATCACGATCTGTGGGATATGGACCTGCCGGCACAGCCGACGCTGGCGGATATTACCGTT GACGGTACTACCGTTCCGGTTATCTATGCGCCAGCGAAAACCGGTAATATCTTTGTGCTGGACAGACGTAATGGCGAGCT GGTCGTGCCCGCCCCGGAAAAACCGGTCCCGCAGGGCGCGGCAAAAGGCGATTACGTCGCCAAAACTCAGCCGTTCTCTG ATTTAACCTTCCGCCCGAAAAAAGATCTCTCCGGCGCGGATATGTGGGGCGCGACCATGTTCGACCAACTGGTGTGCCGC GTCATGTTCCACCAGTTGCGCTATGAAGGTATCTTCACCCCGCCGTCCGAGCAGGGGACATTGGTATTCCCTGGCAACCT GGGGATGTTTGAATGGGGCGGTATTTCCGTCGATCCAGACCGTCAGGTCGCTATCGCTAACCCGATGGCGCTGCCGTTTG TCTCGAAGCTGATCCCACGCGGCCCGGGTAATCCAATGGAGCCGCCGAAAGACGCGAAAGGTACCGGTACAGAAGCGGGT ATTCAGCCACAGTACGGCGTACCATTCGGCGTCACGCTGAATCCGTTCCTTTCGCCGTTTGGCCTGCCGTGTAAACAACC GGCCTGGGGCTATATTTCCGCGTTGGATCTGAAGACCAATGAAATCGTGTGGAAGAAACGTATAGGGACGCCGCGCGACA GTATGCCGTTCCCGATGCCGGTTCCGGTGCCGTTCAACATGGGGATGCCCATGCTGGGCGGGCCAATCTCAACCGCCGGT AATGTGCTGTTCATTGCCGCGACCGCCGACAACTACCTGCGCGCTTATAACATGAGCAACGGGGAAAAACTGTGGCAGGG ACGTTTACCCGCCGGAGGCCAGGCAACGCCTATGACCTATGAGGTAAACGGTAAGCAGTACGTGGTCGTTTCTGCCGGAG GCCACGGTTCGTTTGGTACGAAGATGGGCGACTATATCGTGGCCTATGCTTTGCCTGACGACGCGAAATAA
Upstream 100 bases:
>100_bases GCATTTGATAAGAAAGCTCATTTTGTGATGACGATCACACATGTTAATTCCTATACTTAATTGCTACTAAAAAATTAACA ATTTGGGATGGTGTCTTTTT
Downstream 100 bases:
>100_bases CCATTAATGCCCGGCGTATGCCGGGCATTGTGCCGGGTGGCGGCTTCGCCTTACCCGGCCTGCGTCACAGACATCGGTCA GACCGTAAATCCTAACATCA
Product: glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 796; Mature: 795
Protein sequence:
>796_residues MAENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYPIAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGV WEVGFDFWALTPRSDILVFFGIWLILPFVWHRLVVPSSGAVAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATS SSIADEDWPAYGRNQEGQRYSPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD AASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKADTASPEVIADCPRRIILPVNDGRLFAVNAETGKLCETFANKGVLN LQTNMPDTTPGLYEPTSPPIITDKTIVIAGSVTDNFSTRETSGVIRGFDVNSGKLMWAFDPGAKDPNAIPADEHAFTFNS PNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV DGTTVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPKKDLSGADMWGATMFDQLVCR VMFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPDRQVAIANPMALPFVSKLIPRGPGNPMEPPKDAKGTGTEAG IQPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEIVWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAG NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGTKMGDYIVAYALPDDAK
Sequences:
>Translated_796_residues MAENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYPIAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGV WEVGFDFWALTPRSDILVFFGIWLILPFVWHRLVVPSSGAVAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATS SSIADEDWPAYGRNQEGQRYSPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD AASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKADTASPEVIADCPRRIILPVNDGRLFAVNAETGKLCETFANKGVLN LQTNMPDTTPGLYEPTSPPIITDKTIVIAGSVTDNFSTRETSGVIRGFDVNSGKLMWAFDPGAKDPNAIPADEHAFTFNS PNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV DGTTVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPKKDLSGADMWGATMFDQLVCR VMFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPDRQVAIANPMALPFVSKLIPRGPGNPMEPPKDAKGTGTEAG IQPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEIVWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAG NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGTKMGDYIVAYALPDDAK >Mature_795_residues AENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYPIAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGVW EVGFDFWALTPRSDILVFFGIWLILPFVWHRLVVPSSGAVAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATSS SIADEDWPAYGRNQEGQRYSPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALDA ASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKADTASPEVIADCPRRIILPVNDGRLFAVNAETGKLCETFANKGVLNL QTNMPDTTPGLYEPTSPPIITDKTIVIAGSVTDNFSTRETSGVIRGFDVNSGKLMWAFDPGAKDPNAIPADEHAFTFNSP NSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITVD GTTVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPKKDLSGADMWGATMFDQLVCRV MFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPDRQVAIANPMALPFVSKLIPRGPGNPMEPPKDAKGTGTEAGI QPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEIVWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAGN VLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGTKMGDYIVAYALPDDAK
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=796, Percent_Identity=92.713567839196, Blast_Score=1456, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 86496; Mature: 86365
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS00364 BACTERIAL_PQQ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYPIAGLVMLVVAGLLWRS CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHC KRAALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWHRLVVPSSGA CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCH VAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATSSSIADEDWPAYGRNQEGQRY HHHHHHHHHHCCCEEEECCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC SPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD CHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHCCCCCEEEECCEEEEEECCCEEEEEE AASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKADTASPEVIADCPRRIILPVNDGRLF CCCCCCCEECCCCCCCCCCCCEEEEECCCHHHCCCCCCCCHHHHCCCCEEEEEECCCEEE AVNAETGKLCETFANKGVLNLQTNMPDTTPGLYEPTSPPIITDKTIVIAGSVTDNFSTRE EEECCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCC TSGVIRGFDVNSGKLMWAFDPGAKDPNAIPADEHAFTFNSPNSWAPAAYDAKLDLVYLPM CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCEECCEEEEEEEEC GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV CCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEE DGTTVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPK CCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCC KDLSGADMWGATMFDQLVCRVMFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPD CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEECCCCCEEECCCEEECCC RQVAIANPMALPFVSKLIPRGPGNPMEPPKDAKGTGTEAGIQPQYGVPFGVTLNPFLSPF CEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GLPCKQPAWGYISALDLKTNEIVWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAG CCCCCCCCCCEEEEEECCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGT CEEEEEECCCCEEEEECCCCCHHHHCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCC KMGDYIVAYALPDDAK CCCCEEEEEECCCCCC >Mature Secondary Structure AENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYPIAGLVMLVVAGLLWRS CCCCCCCCEEEEEHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHC KRAALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWHRLVVPSSGA CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCH VAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATSSSIADEDWPAYGRNQEGQRY HHHHHHHHHHCCCEEEECCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC SPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD CHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHCCCCCEEEECCEEEEEECCCEEEEEE AASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKADTASPEVIADCPRRIILPVNDGRLF CCCCCCCEECCCCCCCCCCCCEEEEECCCHHHCCCCCCCCHHHHCCCCEEEEEECCCEEE AVNAETGKLCETFANKGVLNLQTNMPDTTPGLYEPTSPPIITDKTIVIAGSVTDNFSTRE EEECCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCC TSGVIRGFDVNSGKLMWAFDPGAKDPNAIPADEHAFTFNSPNSWAPAAYDAKLDLVYLPM CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCEECCEEEEEEEEC GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV CCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCEEEEEEHHHHHHHCCCCCCCCCEEEEEE DGTTVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPK CCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCC KDLSGADMWGATMFDQLVCRVMFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPD CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEECCCCCEEECCCEEECCC RQVAIANPMALPFVSKLIPRGPGNPMEPPKDAKGTGTEAGIQPQYGVPFGVTLNPFLSPF CEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GLPCKQPAWGYISALDLKTNEIVWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAG CCCCCCCCCCEEEEEECCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGT CEEEEEECCCCEEEEECCCCCHHHHCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCC KMGDYIVAYALPDDAK CCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]