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The map label for this gene is yabI [H]

Identifier: 16763495

GI number: 16763495

Start: 122604

End: 123371

Strand: Direct

Name: yabI [H]

Synonym: STM0105

Alternate gene names: 16763495

Gene position: 122604-123371 (Clockwise)

Preceding gene: 16763494

Following gene: 16763505

Centisome position: 2.52

GC content: 57.42

Gene sequence:

>768_bases
ATGCAAGCACTGCTGGAACACTTTATCACCCAATCCACTCTGTATTCGCTCATCGCCGTGTTGCTGGTCGCCTTCCTGGA
ATCGCTGGCGCTGGTGGGGTTGATTTTACCCGGCACGGTACTGATGGCGGGGCTGGGCGCGCTTATCGGCAGCGGCGAGC
TCAATTTTTGGCATGCCTGGCTGGTGGGTATTATCGGCTGTCTGATGGGCGACTGGATTTCGTTCTGGCTGGGGTGGCGC
TTTAAAAAGCCGCTACACCGCTGGTCTTTTATGAAAAAGAACAAGTCGCTGCTGGATAAAACCGAACACGCGCTGCATCA
GCACAGTATGTTCACGATCCTGGTCGGACGTTTTGTCGGTCCGACGAGGCCGCTGGTGCCGATGGTGGCAGGGATGCTGG
ATCTTCCCGTGGCGAAATTTATTGGGCCGAACTTGATTGGCTGTTTGCTGTGGCCGCCGTTTTATTTCCTGCCGGGCATT
CTGGCGGGAGCGGCAATCGATATTCCTTCCGATATGCAGAGCGGAGATTTCAAATGGCTGCTGCTGGCGACGGCGTTGCT
GCTGTGGGTCGGAGGCTGGCTATGCTGGCGGCTGTGGCGCAGCGGCAAAGCGGCAGTCGATCGTTTAACCGCGTATTTCC
CCCGCAGCCGTTTGCTGTATCTGGCGCCGTTGACGCTCGGGATCGGCGTGGTCGCGCTGGTGGTGCTGGTTCGCCACCCG
CTGATGCCGGTATATATCGATATTCTGCGCAAAGTTGTGGGTTACTAA

Upstream 100 bases:

>100_bases
ACAAAGATGTCATAAGCCGTAACTATTCGGATAATTGACGGCTTGACGAAGGGGGACGGGGTAAGCAGAATCCCTGCTTC
ATCACGCTGACGGACACACT

Downstream 100 bases:

>100_bases
CGATTCCTTTGCCGGATGGCAGCTTCGCCTTATCCGGCCTACAAAATATGGGATTTGATGCCCAATAGCGCTGAGGCGCT
GGCTTGACCGCTTAGTAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQALLEHFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAGLGALIGSGELNFWHAWLVGIIGCLMGDWISFWLGWR
FKKPLHRWSFMKKNKSLLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFIGPNLIGCLLWPPFYFLPGI
LAGAAIDIPSDMQSGDFKWLLLATALLLWVGGWLCWRLWRSGKAAVDRLTAYFPRSRLLYLAPLTLGIGVVALVVLVRHP
LMPVYIDILRKVVGY

Sequences:

>Translated_255_residues
MQALLEHFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAGLGALIGSGELNFWHAWLVGIIGCLMGDWISFWLGWR
FKKPLHRWSFMKKNKSLLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFIGPNLIGCLLWPPFYFLPGI
LAGAAIDIPSDMQSGDFKWLLLATALLLWVGGWLCWRLWRSGKAAVDRLTAYFPRSRLLYLAPLTLGIGVVALVVLVRHP
LMPVYIDILRKVVGY
>Mature_255_residues
MQALLEHFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAGLGALIGSGELNFWHAWLVGIIGCLMGDWISFWLGWR
FKKPLHRWSFMKKNKSLLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFIGPNLIGCLLWPPFYFLPGI
LAGAAIDIPSDMQSGDFKWLLLATALLLWVGGWLCWRLWRSGKAAVDRLTAYFPRSRLLYLAPLTLGIGVVALVVLVRHP
LMPVYIDILRKVVGY

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1786252, Length=254, Percent_Identity=89.3700787401575, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI1788656, Length=147, Percent_Identity=31.2925170068027, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 28428; Mature: 28428

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHCC
>Mature Secondary Structure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CHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]