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The map label for this gene is ybdO [H]

Identifier: 16763404

GI number: 16763404

Start: 15014

End: 15961

Strand: Direct

Name: ybdO [H]

Synonym: STM0014

Alternate gene names: 16763404

Gene position: 15014-15961 (Clockwise)

Preceding gene: 16763403

Following gene: 16763405

Centisome position: 0.31

GC content: 40.61

Gene sequence:

>948_bases
ATGGGATCGAAAGGTGCCAACAAGAGCTTTGATTATAATTTAATCAAAATTCTTGACGCTGTTATTTTGTCAGGAAATGC
GGCTATGGCGGCAAAAAAGTTAGGCATTACACCGGCTGCCGTTTCTCTGGCGTTAAAGCGCCTGCAGAGTTATTACCCGG
AGGAACTGTTTAGCAGAGGGAAAGGCGGGCTCATCCCCACAGCTAAGGCTGTCGACATTCACCAAAATTTCAGTCAGGTG
ATGAAACTGGTGGATGATACATTTCTCTGTAATAGCAAAAAAGATGAAGCGTTCCAGATAACGTTATTAGGCAGTGATAT
TGTTGAAAGCTATTATCTTTCTCAGCTCTATAACAGCGATATATTTGACCGTATTTTGATAAATCATTTCTCCGTAAGAA
ATATGAGTCGGGAGCATATCAGCGAACTTCTGTTTACTGCGCAAGGCGATCTGTTGATTAGTGCCGAACCTTTGCTGGAG
TCCGGCATAGAGAATCAAATCATTGATAGTTTTAAATCATTTGTTTGTATCTGCAGCAGTAAACACATGCTGAGTACCCT
CTCACAACTGTCGCTACATCATTTTTATTCTTCGCGTCATGCGTTATATCAGCCGGGGATGGGGGCTTCAGTGATATATC
ATGATAGCGAATTATTTAAGGATGATCTTTACTATACTGGCAGGCGTATTGTCGGCTATCGCAGTGATTCGCTTAACGGT
TTGATGAGCATGATCGAACGAACCTCATTGATTGCATTGATTCCTTTGAAATTAGCGCTTTTTTATAAAAATCATCGTAA
ATATGACATTAAATTTATTCAGCCTCCGCCCGAACTGGCTTTGAAGTCAGTTCAGGTCTATGCATCCTGGAATAAAAATA
GTAGAAATATATCGACGATTAATGAGATGGTAAGTATGTTACAAACACTTTCCTCCTTCCGTCGCTAA

Upstream 100 bases:

>100_bases
GATGTGATGACATTAATGATTGCTTTTTTAGATGCTGTGAATTGATTTATCTTGAGTATTATCTATATTGCTTTTTTTAG
TTTCCGGAGGCAGACAGCGA

Downstream 100 bases:

>100_bases
TACACCTCATTTTTACGCTTTGATTTAATATGGTTTTAAATGATGTGCTTTGATTTTTACCCTCCTGACAGGGCGCTTAC
ACTCCTTGTGTTAATTATTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQV
MKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLE
SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDDLYYTGRRIVGYRSDSLNG
LMSMIERTSLIALIPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR

Sequences:

>Translated_315_residues
MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQV
MKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLE
SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDDLYYTGRRIVGYRSDSLNG
LMSMIERTSLIALIPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR
>Mature_314_residues
GSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVM
KLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLES
GIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDDLYYTGRRIVGYRSDSLNGL
MSMIERTSLIALIPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=303, Percent_Identity=25.4125412541254, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081684, Length=298, Percent_Identity=25.1677852348993, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081766, Length=257, Percent_Identity=23.3463035019455, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35550; Mature: 35419

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRG
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHCC
KGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCH
IFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLESGIENQIIDSFKSFVCICSS
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHHCC
KHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDDLYYTGRRIVGYRSDSLNG
HHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECHHHHHHHHHHCCCEEEEECCCHHHH
LMSMIERTSLIALIPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHEEEECCCCCCHHHHH
NEMVSMLQTLSSFRR
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
GSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRG
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHCC
KGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHCCH
IFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLESGIENQIIDSFKSFVCICSS
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHHCC
KHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDDLYYTGRRIVGYRSDSLNG
HHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECHHHHHHHHHHCCCEEEEECCCHHHH
LMSMIERTSLIALIPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHEEEECCCCCCHHHHH
NEMVSMLQTLSSFRR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]