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The map label for this gene is pelY

Identifier: 218930989

GI number: 218930989

Start: 4500698

End: 4502416

Strand: Reverse

Name: pelY

Synonym: YPO3994

Alternate gene names: 218930989

Gene position: 4502416-4500698 (Counterclockwise)

Preceding gene: 218930990

Following gene: 218930988

Centisome position: 96.75

GC content: 49.68

Gene sequence:

>1719_bases
ATGAAAAAAAGAGCATTATTGTTGAGTATGTCAGTGCTGGCAATGCTGTATATCCCCGCCGGGCAAGCCGCAGAGATAGA
CCGTCTCACCGTAGTTAAGCAGTATGTCGATAATGTACTGAACAAAGCATCAGATACTTATCACGGTGATAAACCTAGCC
CATTGCTGGCTGATGGTGTTGACCCCCGAACCGGGCAGCAAATGGAGTGGATATTCCCTGATGGCCGTCGTGCTGTGCTA
TCCAACTTCTCTGCACAACAAAATCTGATGCGGGTTATGAGTGGGCTGAGTGAACTTAGCGGTGATCCGCAGTACCAAAA
GCGTGCTGAAGATATCGTGCGTTACCATTTCCAAAATTATCAAGATAATAGCGGCTTGCTCTACTGGGGAGGCCACCGTT
TTGTTGATCTGAAAACCTTGCAGCCGGAAGGGCCGAGCGAAAAAGAGAAAGTTCATGAGCTGAAAAATGCTTATCCCTAT
TATGACCTGATGTTCAGTGTTGATAGCGACGCGACCACCCGTTTTATTCGCGGTTTCTGGAATGCTCATGTGTATGATTG
GCGGATCCTTGAAACCAGCCGGCACGGTGAGTACGGTAAGCCAATGGGGGCATTGTGGGAAAGTACGTTTGAGCAACAAC
CTCCTTTCTTTGCGACCAAAGGGCTCAGTTTCCTTAACGCCGGTAATGACCTGATCTATTCCGCCTCCCTGCTGTATAAA
TATCAGCAAGATCAGGGCGCATTAGTGTGGGCAAAACGTTTGGCTGATCAATATGTGTTGCCGCGAGATGCCAAGACTGG
CCTCGGTGTCTATCAGTTCACTCAGGCACTGAAACGTGAAGAGCCAACAGATGATGCGGATACCCATTCCAAGTTTGGCG
ACCGTGCACAGCGGCAGTTCGGACCCGAGTTCGGGCCAACGGCGCTTGAAGGCAATATGATGCTCAAAGGGCGCACCAGT
ACCCTTTATTCTGAAAATGCCTTGATGCAACTGCAATTGGGTAAGGATTTGGGGGGGCAAGGTGACGATTTACTGAAATG
GACCGTGGATGGCCTGAAAGCTTTCGCCAAATACGGCTACAACGAGCAGGACAATACGTTCCGCCCGATGATCGCTAATG
GTCAGGATTTATCGAATTACACTCTGCCACGTGATGGTTATTACGGCAAAAAAGGATCGGTACTCAAGCCTTATAAGGCG
GGTAACGAGTTTCTGATTTCCTATGCGCGTGCTTATGCTGTCGATAATGACCCCTTACTGTGGAAGGTGGCTCGCGGTAT
TGCCAGCGATCAGGGATTGGGCGATATCGGCAGTGCGCCAGGCAAAGAGATGAAGGTCAAACTGGATACCACCAATAGCG
ATCCGTATGCGCTGTTTGCTTTGCTGGATCTCTACAATGCCAGCCAGGTCGCTGAGTACCGGTCTTTGGCGGAGAAAGTT
GCCGATAACATCATCAAAACGCGTTATATCGACGGTTTCTTTATGGCTTCACCGGATCGGCAATATGCCGATGTGGATGC
TATCGAGCCTTATGCTTTGTTGGCATTGGAAGCATCATTGCGTAACAAACCACAAGCGGTTGCCCCTTTCCTTAATGGGG
CTGGTTTTACCGAAGGTGCTTACCTGATGGCAGACGGTTCAGCCCGAATTTCTACCCGTGACAATGAGCTGTTCTTGCTC
AATGTGGGTGAGACGTTGCAGCCGAATGGCCGTAAATAG

Upstream 100 bases:

>100_bases
CATGAGATTAGCGGCAACGCCAAATAAGAACAGTGAAATAATCCGCATCGGCCCTTGGGTCACTCCTCACCATAACGATT
TCTGGCAGGTAAGATAAGCG

Downstream 100 bases:

>100_bases
CCCCGACAGCAGCCATCCGATTGGCCGCTGCTGGTAAAAGTGCCGGGCTGCTGCTCCCCAGAGTCGGTTAGCCTCTGGCA
CTTTTCCCCACGGGTTATTG

Product: periplasmic pectate lyase precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MKKRALLLSMSVLAMLYIPAGQAAEIDRLTVVKQYVDNVLNKASDTYHGDKPSPLLADGVDPRTGQQMEWIFPDGRRAVL
SNFSAQQNLMRVMSGLSELSGDPQYQKRAEDIVRYHFQNYQDNSGLLYWGGHRFVDLKTLQPEGPSEKEKVHELKNAYPY
YDLMFSVDSDATTRFIRGFWNAHVYDWRILETSRHGEYGKPMGALWESTFEQQPPFFATKGLSFLNAGNDLIYSASLLYK
YQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDRAQRQFGPEFGPTALEGNMMLKGRTS
TLYSENALMQLQLGKDLGGQGDDLLKWTVDGLKAFAKYGYNEQDNTFRPMIANGQDLSNYTLPRDGYYGKKGSVLKPYKA
GNEFLISYARAYAVDNDPLLWKVARGIASDQGLGDIGSAPGKEMKVKLDTTNSDPYALFALLDLYNASQVAEYRSLAEKV
ADNIIKTRYIDGFFMASPDRQYADVDAIEPYALLALEASLRNKPQAVAPFLNGAGFTEGAYLMADGSARISTRDNELFLL
NVGETLQPNGRK

Sequences:

>Translated_572_residues
MKKRALLLSMSVLAMLYIPAGQAAEIDRLTVVKQYVDNVLNKASDTYHGDKPSPLLADGVDPRTGQQMEWIFPDGRRAVL
SNFSAQQNLMRVMSGLSELSGDPQYQKRAEDIVRYHFQNYQDNSGLLYWGGHRFVDLKTLQPEGPSEKEKVHELKNAYPY
YDLMFSVDSDATTRFIRGFWNAHVYDWRILETSRHGEYGKPMGALWESTFEQQPPFFATKGLSFLNAGNDLIYSASLLYK
YQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDRAQRQFGPEFGPTALEGNMMLKGRTS
TLYSENALMQLQLGKDLGGQGDDLLKWTVDGLKAFAKYGYNEQDNTFRPMIANGQDLSNYTLPRDGYYGKKGSVLKPYKA
GNEFLISYARAYAVDNDPLLWKVARGIASDQGLGDIGSAPGKEMKVKLDTTNSDPYALFALLDLYNASQVAEYRSLAEKV
ADNIIKTRYIDGFFMASPDRQYADVDAIEPYALLALEASLRNKPQAVAPFLNGAGFTEGAYLMADGSARISTRDNELFLL
NVGETLQPNGRK
>Mature_572_residues
MKKRALLLSMSVLAMLYIPAGQAAEIDRLTVVKQYVDNVLNKASDTYHGDKPSPLLADGVDPRTGQQMEWIFPDGRRAVL
SNFSAQQNLMRVMSGLSELSGDPQYQKRAEDIVRYHFQNYQDNSGLLYWGGHRFVDLKTLQPEGPSEKEKVHELKNAYPY
YDLMFSVDSDATTRFIRGFWNAHVYDWRILETSRHGEYGKPMGALWESTFEQQPPFFATKGLSFLNAGNDLIYSASLLYK
YQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDRAQRQFGPEFGPTALEGNMMLKGRTS
TLYSENALMQLQLGKDLGGQGDDLLKWTVDGLKAFAKYGYNEQDNTFRPMIANGQDLSNYTLPRDGYYGKKGSVLKPYKA
GNEFLISYARAYAVDNDPLLWKVARGIASDQGLGDIGSAPGKEMKVKLDTTNSDPYALFALLDLYNASQVAEYRSLAEKV
ADNIIKTRYIDGFFMASPDRQYADVDAIEPYALLALEASLRNKPQAVAPFLNGAGFTEGAYLMADGSARISTRDNELFLL
NVGETLQPNGRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PLYP_YERPS (P11278)

Other databases:

- EMBL:   M19399
- EMBL:   BX936398
- PIR:   A27742
- RefSeq:   YP_072315.1
- ProteinModelPortal:   P11278
- SMR:   P11278
- GeneID:   2956229
- GenomeReviews:   BX936398_GR
- KEGG:   yps:YPTB3834
- HOGENOM:   HBG472751
- OMA:   RPMLANG
- ProtClustDB:   CLSK888942
- BioCyc:   YPSE273123:YPTB3834-MONOMER
- BRENDA:   4.2.2.2
- GO:   GO:0005737
- InterPro:   IPR010702
- PIRSF:   PIRSF001432

Pfam domain/function: PF06917 Pectate_lyase_2

EC number: =4.2.2.2

Molecular weight: Translated: 64116; Mature: 64116

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRALLLSMSVLAMLYIPAGQAAEIDRLTVVKQYVDNVLNKASDTYHGDKPSPLLADGV
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DPRTGQQMEWIFPDGRRAVLSNFSAQQNLMRVMSGLSELSGDPQYQKRAEDIVRYHFQNY
CCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
QDNSGLLYWGGHRFVDLKTLQPEGPSEKEKVHELKNAYPYYDLMFSVDSDATTRFIRGFW
CCCCCEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH
NAHVYDWRILETSRHGEYGKPMGALWESTFEQQPPFFATKGLSFLNAGNDLIYSASLLYK
CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHCCCHHHCCCCCCEEEHHHHEE
YQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDRAQRQF
EECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
GPEFGPTALEGNMMLKGRTSTLYSENALMQLQLGKDLGGQGDDLLKWTVDGLKAFAKYGY
CCCCCCCEECCCEEEECCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
NEQDNTFRPMIANGQDLSNYTLPRDGYYGKKGSVLKPYKAGNEFLISYARAYAVDNDPLL
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCHH
WKVARGIASDQGLGDIGSAPGKEMKVKLDTTNSDPYALFALLDLYNASQVAEYRSLAEKV
HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHH
ADNIIKTRYIDGFFMASPDRQYADVDAIEPYALLALEASLRNKPQAVAPFLNGAGFTEGA
HHHHHHHHEECEEEEECCCCCCCCCCCCCCHHHEEEEHHHCCCCCHHHHHHCCCCCCCCE
YLMADGSARISTRDNELFLLNVGETLQPNGRK
EEEECCCEEEEECCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKKRALLLSMSVLAMLYIPAGQAAEIDRLTVVKQYVDNVLNKASDTYHGDKPSPLLADGV
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
DPRTGQQMEWIFPDGRRAVLSNFSAQQNLMRVMSGLSELSGDPQYQKRAEDIVRYHFQNY
CCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
QDNSGLLYWGGHRFVDLKTLQPEGPSEKEKVHELKNAYPYYDLMFSVDSDATTRFIRGFW
CCCCCEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH
NAHVYDWRILETSRHGEYGKPMGALWESTFEQQPPFFATKGLSFLNAGNDLIYSASLLYK
CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHCCCHHHCCCCCCEEEHHHHEE
YQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDRAQRQF
EECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
GPEFGPTALEGNMMLKGRTSTLYSENALMQLQLGKDLGGQGDDLLKWTVDGLKAFAKYGY
CCCCCCCEECCCEEEECCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
NEQDNTFRPMIANGQDLSNYTLPRDGYYGKKGSVLKPYKAGNEFLISYARAYAVDNDPLL
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCHH
WKVARGIASDQGLGDIGSAPGKEMKVKLDTTNSDPYALFALLDLYNASQVAEYRSLAEKV
HHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHH
ADNIIKTRYIDGFFMASPDRQYADVDAIEPYALLALEASLRNKPQAVAPFLNGAGFTEGA
HHHHHHHHEECEEEEECCCCCCCCCCCCCCHHHEEEEHHHCCCCCHHHHHHCCCCCCCCE
YLMADGSARISTRDNELFLLNVGETLQPNGRK
EEEECCCEEEEECCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2832382