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The map label for this gene is yadE [H]

Identifier: 218930421

GI number: 218930421

Start: 3801880

End: 3803073

Strand: Reverse

Name: yadE [H]

Synonym: YPO3404

Alternate gene names: 218930421

Gene position: 3803073-3801880 (Counterclockwise)

Preceding gene: 218930422

Following gene: 218930411

Centisome position: 81.72

GC content: 43.38

Gene sequence:

>1194_bases
ATGATGACCGAACGCGATAGCGAAGTTTATTCGTTGGTTGGTGAACATGTTATTCCCGTCGGAGAAATCAAAGAAGGCCA
GTTGATTCAGGTGACGCCAGTTATTGCTGAATACTATGAGTTTAAGTTTGGCAACGGTACCGGTTTTATTGATAAAGATG
ATTTACGTGAGATTAATAAAGCACAAAAAAACAACGACATGTTGGGCGATTTAAATAAGCCCCTACCGAATCAAAATATA
CTGACGATGCGTGAGGCTAAGGTTTATTTGGCTGCGGATGTGCGCAGTGAACAATTTGCTGTTCTGGCCGAGAACTTACG
TTATCCCATTGTTGGAAAATTGAAAGATCGTTTAAGCAATACTTGGTATCAGGTCAATATTGGTGATCGCTTGGGGTATG
TCAGTAGCGCAGACGCTGAAATAGACAACGGTATTCCGATCCTGACTTACCATCACATGTTGAAGAACGAAGAAAATAAA
CGCTTCCTGAACACCTCAACCACCACATCTGATGTGGCGTTCAGTAATCAAATGGCTTACCTCAAACAGGCGGGCTATGA
CACTATTTCTCTGTATCAGCTCGAAGGCTATCTGAATAACAAGATTAATCTGCCTGCGAAAGTTGTAGTGCTGACATTTG
ATGATGGTTTGAAGTCAGTGAGTCGCTATGCTTATCCTATTCTGAAAGAGAATGGTTTCCGCGCCACGGCGTTTATTATC
TCTTCGCGTATTAAACGGCATCCACAAAAATGGAATCCAGATTCATTACAGTTTATGAGTATTGCTGAACTGAAAGGAAT
TCAAGATGTGTTTGATATACAGTCTCATACGCATTTTTTACACCGCACCGATAATAGACACCATCCCATATTATTGAGTC
GCTCTTATCACAATATCATTTTTGATTTTGAACGCTCACGTCGGGCATTAGCGCAGTTCAATCCGCATGTGATTTTTCTG
TCATATCCCTTCGGGGGTTTTAATCAAACAGCGGTCAATGCGGCGAAGAATGCCGGTTTTCATTTGGCGGTGACCACGAT
GCAAGGCAAGGTCAAGCCAGGCGATAATCCATATACCCTGAAACGGCTCTATATTCTCCGTACTGACTCAATACCGACCA
TGGCGGAGCGCATCGCCAATCAACCCGGCCCGGTTGCGGTAAAACCGGCACCCGCAGTGATTGAAATGGATTAA

Upstream 100 bases:

>100_bases
AGCTATTGGGATGCTACTCAGCATTGTCATGTGGGTAATAATGATACCGACAACCCAGGCTGACCTCTTGCCAAATGTGG
AGGTCACACCACCAAAATAT

Downstream 100 bases:

>100_bases
CGATGTTATGGCATAAGACGTTTATGGCATAAAAAGGAAGGGTGTTTTATTTAAGCGCCCGAGGTTAATCGCATTATTAT
GGCTATCTAGCCAGTGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYEFKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNI
LTMREAKVYLAADVRSEQFAVLAENLRYPIVGKLKDRLSNTWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENK
RFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNNKINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFII
SSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFLHRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFL
SYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTLKRLYILRTDSIPTMAERIANQPGPVAVKPAPAVIEMD

Sequences:

>Translated_397_residues
MMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYEFKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNI
LTMREAKVYLAADVRSEQFAVLAENLRYPIVGKLKDRLSNTWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENK
RFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNNKINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFII
SSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFLHRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFL
SYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTLKRLYILRTDSIPTMAERIANQPGPVAVKPAPAVIEMD
>Mature_397_residues
MMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYEFKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNI
LTMREAKVYLAADVRSEQFAVLAENLRYPIVGKLKDRLSNTWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENK
RFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNNKINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFII
SSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFLHRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFL
SYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTLKRLYILRTDSIPTMAERIANQPGPVAVKPAPAVIEMD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=382, Percent_Identity=65.4450261780105, Blast_Score=532, Evalue=1e-152,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 45059; Mature: 45059

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYEFKFGNGTGFIDKDDLREINK
CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHEEEECCCCCCCCHHHHHHHHH
AQKNNDMLGDLNKPLPNQNILTMREAKVYLAADVRSEQFAVLAENLRYPIVGKLKDRLSN
HHCCCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCC
TWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENKRFLNTSTTTSDVAFSNQMAY
CEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCEEEECCCCCCHHHHHHHHHH
LKQAGYDTISLYQLEGYLNNKINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFII
HHHCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCHHHHCCCCEEHHHHH
SSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFLHRTDNRHHPILLSRSYHNII
HHHHHHCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEE
FDFERSRRALAQFNPHVIFLSYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTL
EEEHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEEEECEECCCCCCEEE
KRLYILRTDSIPTMAERIANQPGPVAVKPAPAVIEMD
EEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEEEC
>Mature Secondary Structure
MMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYEFKFGNGTGFIDKDDLREINK
CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHEEEECCCCCCCCHHHHHHHHH
AQKNNDMLGDLNKPLPNQNILTMREAKVYLAADVRSEQFAVLAENLRYPIVGKLKDRLSN
HHCCCCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCC
TWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENKRFLNTSTTTSDVAFSNQMAY
CEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCEEEECCCCCCHHHHHHHHHH
LKQAGYDTISLYQLEGYLNNKINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFII
HHHCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHCHHHHCCCCEEHHHHH
SSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFLHRTDNRHHPILLSRSYHNII
HHHHHHCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEE
FDFERSRRALAQFNPHVIFLSYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTL
EEEHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEEEECEECCCCCCEEE
KRLYILRTDSIPTMAERIANQPGPVAVKPAPAVIEMD
EEEEEEEECCCHHHHHHHCCCCCCEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]