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The map label for this gene is ydhB [H]

Identifier: 218929479

GI number: 218929479

Start: 2682149

End: 2683081

Strand: Reverse

Name: ydhB [H]

Synonym: YPO2388

Alternate gene names: 218929479

Gene position: 2683081-2682149 (Counterclockwise)

Preceding gene: 218929482

Following gene: 218929475

Centisome position: 57.65

GC content: 50.16

Gene sequence:

>933_bases
ATGTGGTCAGAATATTCTCTGGATGTGGTCGATGCGGTCGCACGCACTGGCAGCTTTAGTGCGGCAGCACAAGAATTGCA
CCGTGTGCCTTCAGCGGTGAGTTATACCGTTCGGCAATTAGAAGACTGGCTTGCGGTTCCTCTGTTTGAACGACGTCATC
GTGATGTGGAACTGACGGAGGCGGGTGTCGTTTTTCTTAAAGAAGCCCGCGATGTTATCAAAAAAATGAATGACACGCGT
CGTCAGTGCCAGCAAGTTGCGAATGGCTGGCGCGGGCAGTTAAACATTGTGGTAGATAAAATCGTCAAACCTCAGCGCAG
CCGCCGTTTAGTGTTAGATTTTTACCGTCATTTTCCTGATGTTGAATTACGTGTGCGTTATGAGGTTTTTAATGGGGTTT
GGGATGCACTGAGCGATGGCCGTGCGGATATTGCCATAGGGGCGACCCGTGCCATCCCAGTGGGTGGGCGTTTTGTCTTT
CGTGATATGGGCTTTCTTAGCTGGCTATGCGTTGTGAGTGTCGATCACCCATTAGCGTTACTATCAGGGCCGTTAAGCGA
TGAACAATTGCGGCCTTATCCCTCACTTTGTCTGGAAGACACGGCACTCAATTTACCCAAGCGGGATACATGGACGCTAG
ATAACCAGCAACGATTGGTTGCACCGGATTGGTCAACAGGAATCGATTGTTTGTGTGCGGGACTGTGTATGGGCATGGTG
CCCGCCCATATGGTATCGCCCTTGATTGCACAGGGAAAATTAGCGGCGATCACGTTGGCAGAGCCGTTACCCGATAGCCC
GTGCTGTCTGACATGGGAGCAGAATAATCACTCTCCCGCACTGGCTTGGTTACTTGATTATCTAGGTGACAGTGTCACGC
TAAATACTGAGTGGTTAAGGGATGATAGCCAGCAATTGATAGCAAACAATTGA

Upstream 100 bases:

>100_bases
CATTCTATCCAATGGCATCTTCTGTTGTGAAACGGTAATATTTGCAAGGTGCTGTTAAAAATTTTGATGGCAAGATGAGC
AGGCTAAAAGGTAGGCAGTA

Downstream 100 bases:

>100_bases
TAGCCAACCATCGATAGCAAATAACCGCAGGGAATGCGGTTATCCGAATCGGGCCGGCAGTGCTGAATACGACCGGCCAA
GGCAAGCATCAACGGCGATA

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MWSEYSLDVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTEAGVVFLKEARDVIKKMNDTR
RQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVF
RDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLRDDSQQLIANN

Sequences:

>Translated_310_residues
MWSEYSLDVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTEAGVVFLKEARDVIKKMNDTR
RQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVF
RDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLRDDSQQLIANN
>Mature_310_residues
MWSEYSLDVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTEAGVVFLKEARDVIKKMNDTR
RQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVF
RDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLRDDSQQLIANN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=304, Percent_Identity=70.7236842105263, Blast_Score=459, Evalue=1e-130,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=32.9824561403509, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1786713, Length=298, Percent_Identity=32.5503355704698, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI87082024, Length=302, Percent_Identity=29.4701986754967, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1789492, Length=280, Percent_Identity=31.4285714285714, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI157672245, Length=176, Percent_Identity=32.3863636363636, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787601, Length=284, Percent_Identity=25, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=282, Percent_Identity=23.0496453900709, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34870; Mature: 34870

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSEYSLDVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTE
CCCCCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHCCCCCEEHH
AGVVFLKEARDVIKKMNDTRRQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCC
VELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVFRDMGFLSWLCVVSVDHPLAL
CEEEEHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHH
LSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCEEECCCCCCCHHHHHHHHHHHHH
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLR
HHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECHHHHC
DDSQQLIANN
CCHHHHHCCC
>Mature Secondary Structure
MWSEYSLDVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTE
CCCCCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHCCCCCEEHH
AGVVFLKEARDVIKKMNDTRRQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCC
VELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVFRDMGFLSWLCVVSVDHPLAL
CEEEEHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHH
LSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCEEECCCCCCCHHHHHHHHHHHHH
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLR
HHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECHHHHC
DDSQQLIANN
CCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]