Click here to switch to the map view.

The map label for this gene is ydbJ [H]

Identifier: 218929423

GI number: 218929423

Start: 2621615

End: 2621956

Strand: Reverse

Name: ydbJ [H]

Synonym: YPO2331

Alternate gene names: 218929423

Gene position: 2621956-2621615 (Counterclockwise)

Preceding gene: 218929425

Following gene: 218929420

Centisome position: 56.34

GC content: 47.08

Gene sequence:

>342_bases
ATGAGAATATTTCAGGGAGTAGTGTGCGGTATGGCGCTATTTTTAGCCGCATGTAGCAGCAATGATTCAAATATCAATAC
GTTAAATAATAGCAATACGTTAAATAATAGCGAGACCTACGAACCCGAGCAGCAGGCTACCAACGCTATCGCTTATCGCA
ATGTGAATATGTCAAATGACGTCAATATGTCCAATTCGGCGGCAGCTAATTGTGCTAATGCGGGGGGAATATTGGCTAAC
ACGAGGCAACTTCATGGCGGTAGCGTAGGCATGTGCCAGTTACCGGATGGCAAACGTTGTGACGAGGAAGCGTTGTTGCG
CGGTGCATGCCCGGTGCGTTAA

Upstream 100 bases:

>100_bases
TTCCCAATAGCGTGATGTACTAAATAGGGTGATGTACTACATAATACTAGCTAGGTTTATAAATTATAGGTTGATAAGTC
TATCCTGCCGGAGCAAAAGA

Downstream 100 bases:

>100_bases
TTGGCAGCAGCTATCGGAAAACTGCCGCCTAAATAAGAGGTTATGCATCAATGAGCATCAGTTAACCCAATCTTTCTGTT
GGTAAACTAAGGTGTGCGTA

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILAN
TRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR

Sequences:

>Translated_113_residues
MRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILAN
TRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR
>Mature_113_residues
MRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILAN
TRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=110, Percent_Identity=41.8181818181818, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 11957; Mature: 11957

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNMSND
CCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHCCHHEECCCCCCC
VNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR
CCCCCCCCCCCCCCCCEECCCEECCCCCEEEEECCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVNMSND
CCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHCCHHEECCCCCCC
VNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR
CCCCCCCCCCCCCCCCEECCCEECCCCCEEEEECCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]