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The map label for this gene is ydgD [H]

Identifier: 218929411

GI number: 218929411

Start: 2606835

End: 2607671

Strand: Direct

Name: ydgD [H]

Synonym: YPO2319

Alternate gene names: 218929411

Gene position: 2606835-2607671 (Clockwise)

Preceding gene: 218929410

Following gene: 218929415

Centisome position: 56.02

GC content: 46.12

Gene sequence:

>837_bases
ATGCGTTTATTTTTATTATTACTTAGCTTGCTACTTATTTCCATTACCACCGCTTTCGCTCTAGATAAACCGGACGGAAG
TAACAGCATTGAGGACCAAACAGCCCTATTTTTTGGTAAAGATGATCGCACTGCGGTAACAAACAGCCGCCAATGGCCAT
GGGAAGCTATTGGGCAAGTTGAAACGGCCAGCGGCAACCCTTGTACTGCAACATTAATTTCCCCACGATTGGTATTAACC
GCCGGCCATTGTGTCTTGACTCCTCCGGGTAATATTGACCAAGCCGTCGCGTTGCGATTCATTTCCGATAAGGGCCACTG
GAAATATCAAATTACGGATCTGAAAACACGGGTTGATGCCAAATTAGGCCAGAAACTCAAAGCCGATGGTGATGGCTGGA
TTGTGCCACCTGCCGCCGCTGCCTATGATTTTGCATTAATCCAATTAACAAATGCAGCGCCTATCCCCATCAAGCCATTG
CCTTTATGGGAAGGTACTGCAAATGAACTGACAAAAGCGCTTAAATTGGTTAACCGTAAGGTAACGCAAGCCGGTTATCC
ACTCGACAACCTCAATACACTTTATAAGCATGAAGACTGTTTAGTAACCGGTTGGGCACAGCAAGGTGTTCTGGCTCACC
AATGCGATACGCTGCCAGGTGACAGCGGCTCACCTCTGCTGCTAAAAAATGGCAATAGTTGGTCATTGATTGCCATTCAA
AGTTCCGCGCCCGCAGCCAAGGAGCGTTATTTAGCTGACAACCGGGCATTATCAGTCACTGCGATTAATAACCGTTTGAA
AAAATTGGTCAATAAGATAGCCGATACAACTCAGTAA

Upstream 100 bases:

>100_bases
GTTAGCCATAGCATAACCACTATGAGCAGCTTTATCAGCAAGGTTCAAGGTGTGTTAATGGATGATTCCTTAGTCAGTAA
AAAAGCAAGGTTAATTATTT

Downstream 100 bases:

>100_bases
TTTTACCTTAGCCCGCTAAATATTATGCGATCTTGTATTTATTGAGGTGAGTCCTTTACTCCTTAGTCGCATAAGATGAG
TTTGGGTTGAATTGAAAAAC

Product: putative pepetidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRLFLLLLSLLLISITTAFALDKPDGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQVETASGNPCTATLISPRLVLT
AGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDAKLGQKLKADGDGWIVPPAAAAYDFALIQLTNAAPIPIKPL
PLWEGTANELTKALKLVNRKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIAIQ
SSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ

Sequences:

>Translated_278_residues
MRLFLLLLSLLLISITTAFALDKPDGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQVETASGNPCTATLISPRLVLT
AGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDAKLGQKLKADGDGWIVPPAAAAYDFALIQLTNAAPIPIKPL
PLWEGTANELTKALKLVNRKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIAIQ
SSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ
>Mature_278_residues
MRLFLLLLSLLLISITTAFALDKPDGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQVETASGNPCTATLISPRLVLT
AGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDAKLGQKLKADGDGWIVPPAAAAYDFALIQLTNAAPIPIKPL
PLWEGTANELTKALKLVNRKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIAIQ
SSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=263, Percent_Identity=62.3574144486692, Blast_Score=321, Evalue=3e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 30176; Mature: 30176

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFLLLLSLLLISITTAFALDKPDGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQV
CHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCCHHHHCCE
ETASGNPCTATLISPRLVLTAGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDA
EECCCCCEEEEEECCEEEEEECCEEECCCCCCCHHHEEEEECCCCCEEEEEEHHHHHHHH
KLGQKLKADGDGWIVPPAAAAYDFALIQLTNAAPIPIKPLPLWEGTANELTKALKLVNRK
HHCHHHCCCCCCEEECCCHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
VTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIAIQ
HHHCCCCHHHHHHHHCCCCEEEECCHHCCCHHHHCCCCCCCCCCEEEEECCCCEEEEEEE
SSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ
CCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLFLLLLSLLLISITTAFALDKPDGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQV
CHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCCHHHHCCE
ETASGNPCTATLISPRLVLTAGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDA
EECCCCCEEEEEECCEEEEEECCEEECCCCCCCHHHEEEEECCCCCEEEEEEHHHHHHHH
KLGQKLKADGDGWIVPPAAAAYDFALIQLTNAAPIPIKPLPLWEGTANELTKALKLVNRK
HHCHHHCCCCCCEEECCCHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
VTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIAIQ
HHHCCCCHHHHHHHHCCCCEEEECCHHCCCHHHHCCCCCCCCCCEEEEECCCCEEEEEEE
SSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ
CCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]