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The map label for this gene is rnfE

Identifier: 218929336

GI number: 218929336

Start: 2516355

End: 2517056

Strand: Reverse

Name: rnfE

Synonym: YPO2240

Alternate gene names: 218929336

Gene position: 2517056-2516355 (Counterclockwise)

Preceding gene: 218929337

Following gene: 218929335

Centisome position: 54.09

GC content: 49.72

Gene sequence:

>702_bases
ATGAGTGAAGCGAAAAACCTGTTAGCACAAGGGTTGTGGAAAAATAACTCTGCGCTGGTGCAACTGTTGGGGCTCTGTCC
ATTATTGGCAGTCTCTTCCACGGCAACCAACGCATTGGGGCTGGGGTTAGCGACCACGCTAGTCCTTGTGTGTACCAATA
CCGCAGTTTCCGCATTGCGCCGTTGGGTACCGTCTGAAATCCGTATTCCTATTTATGTCATGATTATTGCGTCGGTCGTC
AGTACCGTGCAAATGCTGATCAACGCTTATGCCTTTGGTTTATATCAATCATTGGGGATATTTATCCCATTGATTGTGAC
CAACTGTATCGTGATTGGCCGGGCAGAGGCCTATGCAGCGAAGAATCCGGTGGGGCTATCCGCATTGGATGGTTTTGCCA
TGGGGATGGGAGCAACCTGTGCCTTATTTGTTTTAGGGGCACTGCGCGAAATTTTGGGTAACGGTACCTTATTTGACGGC
GCAGACATGTTGCTAGGCAGTTGGGCTACAGTACTGCGCATTGACATCTTGCATTTAGATACCCCTTTCCTGCTGGCGAT
GTTGCCACCAGGTGCGTTTATCGGCCTGGGTTTACTGCTGGCCGGTAAATATGTCATTGACGAGAAAATGAAAGCGCGCA
AAGCCAATACACGGGTTAGCGTACCGCAACTTCAGGATGGAGATGCCGAGAAAGCCTTATGA

Upstream 100 bases:

>100_bases
TCACACCACGGGCTGTCGTGCGGGCAGTAAAAAATGCGGCACTGTATTTGCAAACACTGCCACCACAGCTTAGTCGCCTG
CCCTCCTGTGGAGAAGATCA

Downstream 100 bases:

>100_bases
ATAAAGAAAAACGTGTCACTATTTTGACCCGTCTGCGGGATAACAACCCACATCCAACGACTGAATTAGTTTACTCGACG
CCCTTTGAACTGCTTATTTC

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSEAKNLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALRRWVPSEIRIPIYVMIIASVV
STVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAAKNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDG
ADMLLGSWATVLRIDILHLDTPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL

Sequences:

>Translated_233_residues
MSEAKNLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALRRWVPSEIRIPIYVMIIASVV
STVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAAKNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDG
ADMLLGSWATVLRIDILHLDTPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL
>Mature_232_residues
SEAKNLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALRRWVPSEIRIPIYVMIIASVVS
TVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAAKNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDGA
DMLLGSWATVLRIDILHLDTPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=82.4644549763033, Blast_Score=335, Evalue=2e-93,
Organism=Escherichia coli, GI1787914, Length=143, Percent_Identity=36.3636363636364, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFE_YERP3 (A7FHZ7)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001400875.1
- ProteinModelPortal:   A7FHZ7
- STRING:   A7FHZ7
- GeneID:   5386541
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_1900
- eggNOG:   COG4660
- HOGENOM:   HBG624915
- OMA:   VTNCVII
- ProtClustDB:   PRK12405
- BioCyc:   YPSE349747:YPSIP31758_1900-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00478
- InterPro:   IPR003667
- InterPro:   IPR010968
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01948

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 24588; Mature: 24456

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x4cf95640)-; HASH(0x4d0238d0)-; HASH(0x4d023990)-; HASH(0xcf76130)-; HASH(0xde88a5c)-; HASH(0x4d050000)-;

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAKNLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWVPSEIRIPIYVMIIASVVSTVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHC
KNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDGADMLLGSWATVLRIDILHLD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHCC
TPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
SEAKNLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALR
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWVPSEIRIPIYVMIIASVVSTVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHC
KNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDGADMLLGSWATVLRIDILHLD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHCC
TPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA