Click here to switch to the map view.

The map label for this gene is yoaA [H]

Identifier: 218929178

GI number: 218929178

Start: 2350433

End: 2352337

Strand: Direct

Name: yoaA [H]

Synonym: YPO2071

Alternate gene names: 218929178

Gene position: 2350433-2352337 (Clockwise)

Preceding gene: 218929176

Following gene: 218929179

Centisome position: 50.51

GC content: 50.66

Gene sequence:

>1905_bases
GTGATAGACGATTTTGCAACAGACGGCGCATTAGCGCAGGCTATTAAAGGTTTTAATCCCCGTGAGTCTCAGCGCCAGAT
GGCTGCGGCAATCAGTGAAGCCATTGATGCCAAACAGCAATTGGTGGTAGAAGCGGGTACCGGTACCGGTAAGACGTTTG
CCTATTTAGCTCCGGCGTTGCGGGCTGATTGCAAAGTGATCATCTCCACCGGCTCCAAGGCATTGCAGGATCAGCTCTAT
TCCCGTGATCTTCCTATGATGGTGACCGCGCTAAAATACAAAGGCAAATTGGCTTTATTGAAAGGCCGTTCAAACTATCT
TTGCCTGGAGCGCCTTGAACAGCAGTCATTGGCAGGCGGGGATTTAGCCAGTGAGACATTGGTCGATTTGGTTCGGTTAC
GTGGTTGGTCAGCAGAGACGGTTGATGGTGATATCAGCACCTGTGGTCAGGTTGCGGAAGACAGTTTTGTCTGGCCACTG
GTTACCAGTACCAATGATAATTGTCTGGGTAGCGATTGCCCGCTGTATAAAGATTGTTTTGTGGTGAAAGCCCGTCGTCG
GGCGATGGATGCTGATGTGGTGGTGGTAAACCACCATCTTTTTCTGGCGGACATGGTGGTGAAAGAGAGTGGGTTTGCCG
AACTTATTCCAACCGCTGATGTGATGATTTTTGATGAGGCGCATCAAATCCCCGATATTGCCAGCCAGTATTTTGGTCAA
CAGCTCACCAGCCGGCAACTGATGGATTTAGCAAAAGATATTATTATTGCCTATCGCACCGAGGTGCGTGACTCCGCCCA
ATTACAAAAAAGTGCGGACCGTCTGACGCAAAGTACACAGGATTTTCGTTTAGTGCTGGGCGATCCCGGTTACCGTGGCA
ACTTGCGCGATGTGATGGAACAACCTACGGTTCAACGAGCGTTATTGTTACTTGATGATGCTCTGGAACTTTGCTACGAC
GTAATGAAACTCTCGCTTGGTCGCTCGGCAATGCTGGATGCCGCCTTAGAACGCGCTACCGTTTATCGTAACCGCCTCAA
GCGATTAAAAGATGTCAGAACCCCCGGTTACAGCTATTGGTATGAGTGTAATTCACGCCATTTCGTATTGGCGCTGACCC
CGTTGTCTGTTTCTGATCGCTTCCGGGAGTTGATTGAGGAAAAACCAGGCACCTGGATTTTCACCTCAGCGACACTCTCG
GTGAACGATCAATTGTCGCATTTCACGTTGCGCTTAGGGCTAACTCACGCCAAAACCTTGTTATTACCCAGTCCGTTTGA
TTATGCCAATCAGGCGTTGCTCTGTGTGCCGCGCAATTTACCCTCCGCAAATGAGCCGGGGGCGGCTCGCAAATTAGCGG
TGCTATTAAAGCCGCTGATTGATGCAAACCAAGGGCGCTGTTTCTTCCTGTGTACTTCTCATCAGATGATGCGTGGATTA
GCTGAGGAGTTTCGCGCTAGCATGACATTGCCTGTTTTGGTTCAAGGGGAGACCAGTAAAGGGCAGCTCTTGGCGCAATT
TGTCGCTGCGGGTAATGCGCTACTTGTGGCAACCAGCAGTTTTTGGGAGGGGGTTGATGTGCGTGGCGATGCCTTGTCAT
GCGTGATTATCGATAAGCTGCCATTTACCTCGCCGGACGATCCGTTGTTAAAAGCCCGCATTGAGGATTGCCGCTTACGC
GGTGGTGACCCGTTTAATGATGTGCAATTACCGGATGCGGTTATCACCCTCAAGCAAGGGGTGGGGCGTTTGATTCGTGA
TATTGATGATCGCGGTGTGTTGGTGATTTGCGATAACCGTTTGGTTATGCGTCCTTATGGCGCGATGTTCTTAAATAGCT
TACCCCCGGCACCCCGGACACGGGATCTGGCGAAAGCCATCGCCTTTCTCAAGCAGCGCGATTAA

Upstream 100 bases:

>100_bases
GTTATGTACGAAGGGTATCATAGCAAGGAAAGAGAATGTGTGGTCGTAGAGCCATTGGCTTGGCATAATCAGCGCTGATT
TCGCCCGGCAGAGAGACAGA

Downstream 100 bases:

>100_bases
AAGTAAAGAAGAGTGGGGTGTGCTACTATGCGCGCCCTGTAAATACATATTTATTTCCTGCCGAGGTTGGCATGTCTACG
CGAATTTTAGCGATCGATAC

Product: putative DEAD box family helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 634; Mature: 634

Protein sequence:

>634_residues
MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPALRADCKVIISTGSKALQDQLY
SRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGGDLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPL
VTSTNDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ
QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVMEQPTVQRALLLLDDALELCYD
VMKLSLGRSAMLDAALERATVYRNRLKRLKDVRTPGYSYWYECNSRHFVLALTPLSVSDRFRELIEEKPGTWIFTSATLS
VNDQLSHFTLRLGLTHAKTLLLPSPFDYANQALLCVPRNLPSANEPGAARKLAVLLKPLIDANQGRCFFLCTSHQMMRGL
AEEFRASMTLPVLVQGETSKGQLLAQFVAAGNALLVATSSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLR
GGDPFNDVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTRDLAKAIAFLKQRD

Sequences:

>Translated_634_residues
MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPALRADCKVIISTGSKALQDQLY
SRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGGDLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPL
VTSTNDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ
QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVMEQPTVQRALLLLDDALELCYD
VMKLSLGRSAMLDAALERATVYRNRLKRLKDVRTPGYSYWYECNSRHFVLALTPLSVSDRFRELIEEKPGTWIFTSATLS
VNDQLSHFTLRLGLTHAKTLLLPSPFDYANQALLCVPRNLPSANEPGAARKLAVLLKPLIDANQGRCFFLCTSHQMMRGL
AEEFRASMTLPVLVQGETSKGQLLAQFVAAGNALLVATSSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLR
GGDPFNDVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTRDLAKAIAFLKQRD
>Mature_634_residues
MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPALRADCKVIISTGSKALQDQLY
SRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGGDLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPL
VTSTNDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ
QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVMEQPTVQRALLLLDDALELCYD
VMKLSLGRSAMLDAALERATVYRNRLKRLKDVRTPGYSYWYECNSRHFVLALTPLSVSDRFRELIEEKPGTWIFTSATLS
VNDQLSHFTLRLGLTHAKTLLLPSPFDYANQALLCVPRNLPSANEPGAARKLAVLLKPLIDANQGRCFFLCTSHQMMRGL
AEEFRASMTLPVLVQGETSKGQLLAQFVAAGNALLVATSSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLR
GGDPFNDVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTRDLAKAIAFLKQRD

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=630, Percent_Identity=79.5238095238095, Blast_Score=1056, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=686, Percent_Identity=27.6967930029155, Blast_Score=180, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 70150; Mature: 70150

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPAL
CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHEEEEEECCCCCCHHHHHHHHH
RADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGG
HCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC
DLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPLVTSTNDNCLGSDCPLYKDCF
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHH
VVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ
HHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCEECCCCCEEEECCCCCCHHHHHHHHHH
QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
QPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAALERATVYRNRLKRLKDVRTPGYSYW
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
YECNSRHFVLALTPLSVSDRFRELIEEKPGTWIFTSATLSVNDQLSHFTLRLGLTHAKTL
EEECCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHEEEEEEECHHHHEE
LLPSPFDYANQALLCVPRNLPSANEPGAARKLAVLLKPLIDANQGRCFFLCTSHQMMRGL
ECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
AEEFRASMTLPVLVQGETSKGQLLAQFVAAGNALLVATSSFWEGVDVRGDALSCVIIDKL
HHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNR
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCE
LVMRPYGAMFLNSLPPAPRTRDLAKAIAFLKQRD
EEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPAL
CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHEEEEEECCCCCCHHHHHHHHH
RADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGG
HCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC
DLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPLVTSTNDNCLGSDCPLYKDCF
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHH
VVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ
HHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCEECCCCCEEEECCCCCCHHHHHHHHHH
QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
QPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAALERATVYRNRLKRLKDVRTPGYSYW
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
YECNSRHFVLALTPLSVSDRFRELIEEKPGTWIFTSATLSVNDQLSHFTLRLGLTHAKTL
EEECCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHEEEEEEECHHHHEE
LLPSPFDYANQALLCVPRNLPSANEPGAARKLAVLLKPLIDANQGRCFFLCTSHQMMRGL
ECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
AEEFRASMTLPVLVQGETSKGQLLAQFVAAGNALLVATSSFWEGVDVRGDALSCVIIDKL
HHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECC
PFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNR
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCE
LVMRPYGAMFLNSLPPAPRTRDLAKAIAFLKQRD
EEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]