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The map label for this gene is irp4

Identifier: 218929024

GI number: 218929024

Start: 2144573

End: 2145376

Strand: Reverse

Name: irp4

Synonym: YPO1908

Alternate gene names: NA

Gene position: 2145376-2144573 (Counterclockwise)

Preceding gene: 218929025

Following gene: 218929023

Centisome position: 46.1

GC content: 58.33

Gene sequence:

>804_bases
GTGACGCAATCTGCAATGTGCATCCCGCTGTGGCCCGCCCGGAACGGCAATACTGCGCATCTGGTCATGTGCCCTTTCGC
TGGCGGCAGCAGTAGCGCGTTTCGCCACTGGCAAGCTGAGCAACTGACTGATTGCGCGCTTTCTCTGGTGACCTGGCCGG
GGCGCGATCGCCTTCGCCATCTGGAACCGCTCAGAAGCATTACACAACTGGCGGCACTGCTGGCGAACGAGCTGGAAGCA
TCCGTATCGCCTGACACGCCGCTTTTACTCGCCGGGCACAGCATGGGGGCGCAGGTGGCGTTTGAAACCTGCCGACTTCT
GGAGCAACGGGGGCTTGCGCCACAAGGACTGATTATTTCCGGGTGCCATGCCCCGCATCTGCATTCTGAACGCCAGCTCA
GCCATCGCGATGATGCCGACTTTATCGCTGAGCTGATAGACATTGGCGGATGTTCTCCTGAACTGCGGGAAAACCAGGAA
TTAATGTCGCTGTTTCTTCCTCTTCTGCGCGCTGATTTTTACGCCACCGAGAGCTATCACTACGACTCGCCCGACGTCTG
TCCGCCGCTGCGCACGCCTGCGCTGTTATTGTGCGGCAGCCACGATCGCGAAGCCTCCTGGCAGCAGGTCGATGCCTGGC
GTCAGTGGCTGAGCCACGTTACAGGCCCGGTGGTGATTGACGGCGATCATTTCTATCCCATTCAACAAGCCCGGTCCTTT
TTTACGCAGATTGTCCGCCATTTTCCCCACGCATTTTCTGCAATGACCGCGTTGCAAAAACAGCCCAGTACTTCAGAAAG
GTGA

Upstream 100 bases:

>100_bases
AGATTTTACGTAAGACCGGCAATGCGGAGATCAGACGCCTGACGCCGCCGCACCACGACCGGTTAGCCGGTTTCTACAAC
GATGATGATAAGGAGGCGCT

Downstream 100 bases:

>100_bases
CGCATGAATTCTTCCTTTGAATCTCTGATTGAACAGTATCCCTTACCCATTGCCGAACAGTTGCGCCACTGGGCGGCCCG
TTATGCCTCGCGAATTGCCG

Product: yersiniabactin biosynthetic protein YbtT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLTDCALSLVTWPGRDRLRHLEPLRSITQLAALLANELEA
SVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIISGCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELRENQE
LMSLFLPLLRADFYATESYHYDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFYPIQQARSF
FTQIVRHFPHAFSAMTALQKQPSTSER

Sequences:

>Translated_267_residues
MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLTDCALSLVTWPGRDRLRHLEPLRSITQLAALLANELEA
SVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIISGCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELRENQE
LMSLFLPLLRADFYATESYHYDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFYPIQQARSF
FTQIVRHFPHAFSAMTALQKQPSTSER
>Mature_266_residues
TQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLTDCALSLVTWPGRDRLRHLEPLRSITQLAALLANELEAS
VSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIISGCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELRENQEL
MSLFLPLLRADFYATESYHYDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFYPIQQARSFF
TQIVRHFPHAFSAMTALQKQPSTSER

Specific function: Probable thioesterase [H]

COG id: COG3208

COG function: function code Q; Predicted thioesterase involved in non-ribosomal peptide biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012223
- InterPro:   IPR001031 [H]

Pfam domain/function: PF00975 Thioesterase [H]

EC number: NA

Molecular weight: Translated: 29783; Mature: 29652

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLTDCALSLVTWPGRDRLRH
CCCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LEPLRSITQLAALLANELEASVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIIS
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEE
GCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELRENQELMSLFLPLLRADFYATESYH
CCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC
YDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFYPIQQARSF
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
FTQIVRHFPHAFSAMTALQKQPSTSER
HHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLTDCALSLVTWPGRDRLRH
CCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LEPLRSITQLAALLANELEASVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIIS
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEE
GCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELRENQELMSLFLPLLRADFYATESYH
CCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC
YDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFYPIQQARSF
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHH
FTQIVRHFPHAFSAMTALQKQPSTSER
HHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2311935; 8335354 [H]