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The map label for this gene is rbsC [H]

Identifier: 218928935

GI number: 218928935

Start: 2062577

End: 2063506

Strand: Direct

Name: rbsC [H]

Synonym: YPO1815

Alternate gene names: 218928935

Gene position: 2062577-2063506 (Clockwise)

Preceding gene: 218928934

Following gene: 218928936

Centisome position: 44.32

GC content: 51.18

Gene sequence:

>930_bases
ATGTTGATCGTTATCGTGTGTGTCACCGTCGGTGCTATTAATCCTGCTTTTTTACAACTCTCCAATCTGTTTGATATTGC
GAGAGCCTCGGTCGTGGTGGGTCTGTTTGCATTGGGCGTCTTGATTGTACTCGCCTCCGGTGGCCTGGATGTCTCGTTTA
CGGCGATTGCGGCACTGTGCATGTACGCCGTCACGAAGTTTGTCTTGTGGTATTGGCCTGATGCCCCGGTTATCGCCATG
TTTATTGCCAGTGCCTGTGGGGGGGCCATCTTGGGAGGGATTAACGGTGTTTTGGTCCACAGCCTAAAAACCTCATCGCT
TATTGTGACTATTGGCACCCAATACCTGTATCGGGGGGGGCTACTAACGTTTATTGGCACGGCGTTATACATGAATATTC
CCGAGCAATTAGAGCAATTTGGTAAAAGCCCGCTCTATACCGTCAGCAATATCAATCAAGGCATCACGATACTGCCGCTG
TTCTTTTTAATACTGGTGTTTGCCAGCTTACTGACCTGGTGGTTACTGAACCGCACCTTGCTGGGCCGGGCCATTTTTGC
CATTGGTGGTAATAGCGATATTGCCCAACGGCTCGGTTTTGATGTGCGCGGGGTACAGATCTTTGTATTTACCTACGCCG
GGTTGCTGGCGGGGATCGCGGGCATGGTGCATGTAGCCAGTAACCGCATCGCTAACCCGTTTGATTTAAATGGTCTGGAG
TTAACGGTCATTGCTGCTGTCATTCTCGGGGGCGCACGTATTACCGGCGGCAGTGGTACGGTTTTGGGCACCCTCATGGG
GGTGGTCTTGGTGGTGTTGGTGAACAACGTTTTAATTCTGGTGGGTATTCCAAGTACATGGCAGAAGGTGATTATCGGGG
CGTTTATTATCGCCGCCGGTAGCGCCTTTGGTTGGCGTAAGTATCGCTAA

Upstream 100 bases:

>100_bases
TATAGCTATGGTTATTGATCTCCCCGCTCACTCGAAGCCATCACGCTCATTCAACGCCATCATCGCATGGTGCCTACAGC
GGCCGTCGACCTTTACCTTT

Downstream 100 bases:

>100_bases
GGCCGATTTCAGCATTTATGTTTAATCAATGATGATGAGGATATCAATATGTCAAAAATTGTCAGCCTGGGGATTCATGT
TCTTGATGTATTAGGACGTC

Product: putative sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGLDVSFTAIAALCMYAVTKFVLWYWPDAPVIAM
FIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTALYMNIPEQLEQFGKSPLYTVSNINQGITILPL
FFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFVFTYAGLLAGIAGMVHVASNRIANPFDLNGLE
LTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQKVIIGAFIIAAGSAFGWRKYR

Sequences:

>Translated_309_residues
MLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGLDVSFTAIAALCMYAVTKFVLWYWPDAPVIAM
FIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTALYMNIPEQLEQFGKSPLYTVSNINQGITILPL
FFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFVFTYAGLLAGIAGMVHVASNRIANPFDLNGLE
LTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQKVIIGAFIIAAGSAFGWRKYR
>Mature_309_residues
MLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGLDVSFTAIAALCMYAVTKFVLWYWPDAPVIAM
FIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGGLLTFIGTALYMNIPEQLEQFGKSPLYTVSNINQGITILPL
FFLILVFASLLTWWLLNRTLLGRAIFAIGGNSDIAQRLGFDVRGVQIFVFTYAGLLAGIAGMVHVASNRIANPFDLNGLE
LTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQKVIIGAFIIAAGSAFGWRKYR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=291, Percent_Identity=32.9896907216495, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=30.3630363036304, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1790524, Length=300, Percent_Identity=31.3333333333333, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787794, Length=296, Percent_Identity=30.0675675675676, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=30.2083333333333, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789992, Length=347, Percent_Identity=25.6484149855908, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87082395, Length=284, Percent_Identity=28.5211267605634, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI145693152, Length=294, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693214, Length=282, Percent_Identity=30.4964539007092, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32653; Mature: 32653

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGLDVSFTAIAALC
CEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MYAVTKFVLWYWPDAPVIAMFIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCHHHHEEECCCEEEEEECHHHHHHCC
LLTFIGTALYMNIPEQLEQFGKSPLYTVSNINQGITILPLFFLILVFASLLTWWLLNRTL
HHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGRAIFAIGGNSDIAQRLGFDVRGVQIFVFTYAGLLAGIAGMVHVASNRIANPFDLNGLE
HHHHHEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
LTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQKVIIGAFIIAAG
HHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCC
SAFGWRKYR
CCCCCCCCC
>Mature Secondary Structure
MLIVIVCVTVGAINPAFLQLSNLFDIARASVVVGLFALGVLIVLASGGLDVSFTAIAALC
CEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MYAVTKFVLWYWPDAPVIAMFIASACGGAILGGINGVLVHSLKTSSLIVTIGTQYLYRGG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCHHHHEEECCCEEEEEECHHHHHHCC
LLTFIGTALYMNIPEQLEQFGKSPLYTVSNINQGITILPLFFLILVFASLLTWWLLNRTL
HHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGRAIFAIGGNSDIAQRLGFDVRGVQIFVFTYAGLLAGIAGMVHVASNRIANPFDLNGLE
HHHHHEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
LTVIAAVILGGARITGGSGTVLGTLMGVVLVVLVNNVLILVGIPSTWQKVIIGAFIIAAG
HHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCC
SAFGWRKYR
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]