Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 218928932

GI number: 218928932

Start: 2058739

End: 2059800

Strand: Direct

Name: rbsC [H]

Synonym: YPO1812

Alternate gene names: 218928932

Gene position: 2058739-2059800 (Clockwise)

Preceding gene: 218928931

Following gene: 218928933

Centisome position: 44.24

GC content: 50.66

Gene sequence:

>1062_bases
ATGGGCTGCAAACAATTAACTCGCCGTATCAAACAATTAACTCGCCGTATGTTGAACGATAAGCAACTTAACTTCTTGGT
CATGGTCAATATGTTGGTTATTACGGTGGCCGCTACCCTTACCCAAGGGGCCTTTGTCGATCTCTACAATCTACAAACGA
TGGCGGGGCAGGTCCCTGAATTGGGCTTGCTGGCGATGGGGGGCATGCTGGCCATGATCGTGGGTAATGGGGGGATTGAT
CTCTCGGGTATCGCTCTCGCTAATCTGGCGGCGGTAGTCGCCGGCACGCTCACACCGGGGTGGGTCAATGCTGTTGATAG
CCCTTTGCTGTTTACCGTGGTTTTTGTCTTATGCGCCTTGTTGGTCGGTCTGACCGGGGGGCTAATCAATGGGGTGCTCA
TTGCTTACGCTAAACTCACGCCGATCCTCTGCACCTTAGGCACTCAACTTATTTTCACCGGCTTTGCTGTCGTGATTTCT
CATGGTAGCGGCGTTAAGATTGGTTTTATTGAACCGCTGTCCTTTATTGGTGATGGCCTTATTGCCAATATTCCGTTCTG
TTTTGCGCTGTTTATCCTCCTCGCCACGTTGTTAGGTCTTTGGTTACGTTTTAGTGCGACCGGGATACGGCTATATCTCT
TGGGAACCAATCTTAAAGCTGCACAGTATATTGGCATTGCGCAACAACGGTTGCTGGTCGTCATCTATACCTTATCAGGC
ACTTTAGCCGCTATCGCCGGCATTATTATTGCCGCCCGTTCTACCAGCGCTACCGCCGATTACGGTAGCTCTTATGTGCT
GATTGCTATTTTGATCGCTGTGATGGCTGGGGTCCGCCCAGAGGGGGGATATGGGCGAATGGGCTGCCTATTGCTATCGG
CTACCGCCCTCCAGTTTCTTTCCAGTACCTTTACTTTTCTGGACGTCTCCAGCTTTTTCCGCGACTGCGCTTGGGGCGCG
TTGTTGCTGTTCTTCATTATTTTTTCCCGCATTAATCCCTTGGATTTTGTTAAATCGTTATGGCGAAAAAATACCCCGTC
AGTGCAATCCCCCGTGCGCTGA

Upstream 100 bases:

>100_bases
GGAGCACTGATCAGGAGCCTCAAACCGTTATCGTGATTCAAACCGTTACCGTAATTCAAACAGTATGGGGGTTCAAACTG
TTATGAAAGTTCAAACACGA

Downstream 100 bases:

>100_bases
TGAGCGGTGTTCCTGGGGGAAATCAAATGAGGAAACACCATTATGATGATTAAAAAGTTGTGTCTCATTGCCGCCCTCGT
ATTCAGCCTCGGGATCATGG

Product: putative sugar transport system permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGGMLAMIVGNGGID
LSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVIS
HGSGVKIGFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSG
TLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFRDCAWGA
LLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR

Sequences:

>Translated_353_residues
MGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGGMLAMIVGNGGID
LSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVIS
HGSGVKIGFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSG
TLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFRDCAWGA
LLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
>Mature_352_residues
GCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGGMLAMIVGNGGIDL
SGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISH
GSGVKIGFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSGT
LAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFRDCAWGAL
LLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=289, Percent_Identity=28.719723183391, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693152, Length=204, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790524, Length=326, Percent_Identity=26.0736196319018, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=205, Percent_Identity=34.1463414634146, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787794, Length=285, Percent_Identity=25.6140350877193, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788896, Length=197, Percent_Identity=28.9340101522843, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=28.3737024221453, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37541; Mature: 37409

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPE
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCC
LGLLAMGGMLAMIVGNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCAL
HHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
LVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKIGFIEPLSFIGDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCH
IANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEEEEHHHH
TLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFL
HHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SSTFTFLDVSSFFRDCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GCKQLTRRIKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPE
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCC
LGLLAMGGMLAMIVGNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCAL
HHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
LVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKIGFIEPLSFIGDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCH
IANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEEEEHHHH
TLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFL
HHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SSTFTFLDVSSFFRDCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]