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The map label for this gene is rarA [H]

Identifier: 218928526

GI number: 218928526

Start: 1551100

End: 1552443

Strand: Direct

Name: rarA [H]

Synonym: YPO1378

Alternate gene names: 218928526

Gene position: 1551100-1552443 (Clockwise)

Preceding gene: 218928525

Following gene: 218928527

Centisome position: 33.33

GC content: 52.68

Gene sequence:

>1344_bases
GTGAGTAATATGTCCCTCGATTTTTCCCAAAATGAGTTTCAACCACTGGCCGCGCGTATGCGGCCTTTGACGTTGGATCA
ATATATTGGTCAGCAACATTTGCTGGCACCGGGTAAGCCGCTACCGCGGGCAATCGTTGCCGGGCAGTTACACTCCATGA
TCCTCTGGGGGCCGCCGGGAACCGGTAAAACAACATTGGCAGAAATTATTGGCCGCTACGGTCAAGCCGATGTTGAGCGG
ATTTCTGCGGTGACCTCCGGTATTAAGGAGATTCGCGAGGCTATCGAGCGGGCGCGGCAAAACCGTGATGCTGGCCGGCG
GACTATCTTGTTTGTTGATGAAGTTCATCGTTTCAATAAGAGCCAGCAGGATGCATTTCTACCCCATATTGAAGATGGCA
CCATCACTTTTATTGGTGCTACAACAGAGAACCCCTCCTTTGAACTAAATTCTGCATTGCTCTCGCGAGCCAGAGTCTAT
TTGCTCAAGGCACTAACCGCAGCAGATATCGAGAAGGTGATTGACCAGGCGATGTCTGATAGCAGTCGAGGTTACGGCGG
GCAGAATATTTTACTGCCTGATGAAACTCGCCGCATGATGTCTGAGCTCGTCGGCGGAGATGCTCGGCGGGCGTTGAATA
GCCTGGAAATGATGGCTGACATGGCTGAAATAGATGCCAGTGGCGTCCGTGTGTTGACGCCAGAATTGCTGAAAGAGGTC
TCTGGTGAGCGTAGCGCCCGTTTTGATAACAAAGGCGACCGTTATTACGATTTGATCTCGGCGGTACATAAATCTATTCG
TGGTTCGGCACCGGATGCGGCGCTGTACTGGTATGCACGCATTATCACCGCGGGGGGCGATCCGCTCTATGTTGCCCGGC
GTTTGTTGGCTATCGCATCGGAAGATGTTGGTAACGCCGATCCACGTGCGATGCAGGTGGCGATATCGGCCTGGGATTGC
TTTACCCGTGTGGGGCCAGCCGAAGGGGAGCGGGCGATTGCCCAGGCAATTGTTTATTTAGCCTGCGCGCCTAAAAGTAA
CGCGGTGTATGCTGCATTTAAAGCCGCGATGCAGGATGCTCGCGATAAGCCCGATTTCGATGTTCCAGAGCATTTGCGCA
ATGCGCCGACTAAACTGATGAAAGAGATGGGGCTTGGCGCTGAGTATCGCTATGCCCATGATGAGCAGCACGCCTATGCT
GCAGGTGAAAATTATTTTCCACCTGAAATGGCGGCGACCCGCTACTATTTGCCAACATCTCGTGGTCTGGAGGGTAAAAT
CGGTGAGAAGCTGGCATGGTTAGCTGAACAGGATAAAAATAGCCCGATAAAACGCTACCGCTAG

Upstream 100 bases:

>100_bases
ACACTGAAAAGCCAGCAAAGTAGCGTGGTTGATGCCAGTAAGTTTACCTTTACTCCCCCAAAAGGTGTGACGCTGGATGA
TCAGCGGTAGTGAGGTCTGA

Downstream 100 bases:

>100_bases
CTTTGCGGTTGCGGTAAGGTTAGCATTATAACTACTTGGTAAGTGGTTGTTTATATCGCTTACGTCGTTAAATTCTTCTT
TAATTACCATTTATGCCCTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSNMSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYGQADVER
ISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKALTAADIEKVIDQAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEV
SGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAISAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYA
AGENYFPPEMAATRYYLPTSRGLEGKIGEKLAWLAEQDKNSPIKRYR

Sequences:

>Translated_447_residues
MSNMSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYGQADVER
ISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKALTAADIEKVIDQAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEV
SGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAISAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYA
AGENYFPPEMAATRYYLPTSRGLEGKIGEKLAWLAEQDKNSPIKRYR
>Mature_446_residues
SNMSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPGTGKTTLAEIIGRYGQADVERI
SAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL
LKALTAADIEKVIDQAMSDSSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEVS
GERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAISAWDCF
TRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDARDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAA
GENYFPPEMAATRYYLPTSRGLEGKIGEKLAWLAEQDKNSPIKRYR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=40.3189066059225, Blast_Score=295, Evalue=8e-80,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=35.7630979498861, Blast_Score=234, Evalue=9e-62,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=86.3534675615213, Blast_Score=810, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=451, Percent_Identity=39.689578713969, Blast_Score=290, Evalue=3e-79,
Organism=Saccharomyces cerevisiae, GI6324039, Length=214, Percent_Identity=28.0373831775701, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49456; Mature: 49325

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNMSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPG
CCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCHHHHHHHHHCEEEECCCC
TGKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNK
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSD
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEV
CCCCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH
SGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIAS
CCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
RDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFPPEMAATRYYLPTS
CCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHCEEECCCC
RGLEGKIGEKLAWLAEQDKNSPIKRYR
CCCCCCHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
SNMSLDFSQNEFQPLAARMRPLTLDQYIGQQHLLAPGKPLPRAIVAGQLHSMILWGPPG
CCCCCCCCCCHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCHHHHHHHHHCEEEECCCC
TGKTTLAEIIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNK
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAADIEKVIDQAMSD
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSRGYGGQNILLPDETRRMMSELVGGDARRALNSLEMMADMAEIDASGVRVLTPELLKEV
CCCCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH
SGERSARFDNKGDRYYDLISAVHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIAS
CCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYAAFKAAMQDA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
RDKPDFDVPEHLRNAPTKLMKEMGLGAEYRYAHDEQHAYAAGENYFPPEMAATRYYLPTS
CCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHCEEECCCC
RGLEGKIGEKLAWLAEQDKNSPIKRYR
CCCCCCHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]