Click here to switch to the map view.

The map label for this gene is stf [H]

Identifier: 218928407

GI number: 218928407

Start: 1409403

End: 1410182

Strand: Direct

Name: stf [H]

Synonym: YPO1252

Alternate gene names: 218928407

Gene position: 1409403-1410182 (Clockwise)

Preceding gene: 218928406

Following gene: 218928408

Centisome position: 30.29

GC content: 46.92

Gene sequence:

>780_bases
ATGCAAAAAATTGGAGATATTCCTAATACACGCGCCGACAGTAACGGCGAATTTACCGACGGCAACGTCGCCGGTGGCGT
TCCACCCACCCTATTACCGGCTGAGTGGTTTAATACTATTCAGCGAGAGTTGGTCACGGTGGTTCAAGATGGAGGATTAA
CCTTAGATCCTAATGACGATACTCAGGTTTTAGCCGCACTGAAAAAGCTATTTTTGCAGTCTGGTAATAATCTCTCTGAG
ATAAAAGACGCCGGTCCAACGGCTATAACACAGACTCTCGCAAACCTTGGTTTGGGGGAAGGCTCAGCAATTCCGGTTGG
GGTCCCGCTTCCGTGGCCTACCGCCACTCCACCCGAAGGTTGGTTAAAATGTAATGGTGCTATCTTTGACAAAGTAAAAT
ATCCAAAATTAGCATTGGCTTATCCGTCAGGTATTTTACCGGACTTGCGGGGTGAGTTTATTCGTGGCTGGGATGATGGG
CTTGGGGTTGATGCAGGTCGGGAAATACTATCAATACAAGGTGATGCGATAAGAAATATCTCTGGTGGAATTCAGGGACG
GAATGAAGCAACATCGGCTAGACTTTTCAGCTCTAACGCCACTGGAGTTTTTCGCACTGACGGTCAATTTGGATCTTATG
CTGCTAGCGCAGATGTGGCAGTAGGCGTTACGGATGATAGACTCGCCGAACTTTTTTTTGACGCTTCCAGATCTGTACCC
ACAGCCAATGAAAATAGACCACGGAATATTGCTTTTAACTATATTGTGCGAGCGGCATAA

Upstream 100 bases:

>100_bases
TTGATATTTCAGTGTGTCTATCTGGCGGCCACGCCAAGTACTTCGGGTCATTATTCATTAACCATTTCTATTTTATCGCT
TTAACCAGTGAGGTATTACC

Downstream 100 bases:

>100_bases
TGATTATTAAATTTGATAAAGATAGCGACGCAGTTACCGCAGTAAAAGTACTATTTATAATTTAGTCTACGGTATCTCAG
TGAATTAATAAATATACCGG

Product: putative bacteriophage tail fiber protein

Products: NA

Alternate protein names: Side tail fiber protein homolog from lambdoid prophage e14 [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MQKIGDIPNTRADSNGEFTDGNVAGGVPPTLLPAEWFNTIQRELVTVVQDGGLTLDPNDDTQVLAALKKLFLQSGNNLSE
IKDAGPTAITQTLANLGLGEGSAIPVGVPLPWPTATPPEGWLKCNGAIFDKVKYPKLALAYPSGILPDLRGEFIRGWDDG
LGVDAGREILSIQGDAIRNISGGIQGRNEATSARLFSSNATGVFRTDGQFGSYAASADVAVGVTDDRLAELFFDASRSVP
TANENRPRNIAFNYIVRAA

Sequences:

>Translated_259_residues
MQKIGDIPNTRADSNGEFTDGNVAGGVPPTLLPAEWFNTIQRELVTVVQDGGLTLDPNDDTQVLAALKKLFLQSGNNLSE
IKDAGPTAITQTLANLGLGEGSAIPVGVPLPWPTATPPEGWLKCNGAIFDKVKYPKLALAYPSGILPDLRGEFIRGWDDG
LGVDAGREILSIQGDAIRNISGGIQGRNEATSARLFSSNATGVFRTDGQFGSYAASADVAVGVTDDRLAELFFDASRSVP
TANENRPRNIAFNYIVRAA
>Mature_259_residues
MQKIGDIPNTRADSNGEFTDGNVAGGVPPTLLPAEWFNTIQRELVTVVQDGGLTLDPNDDTQVLAALKKLFLQSGNNLSE
IKDAGPTAITQTLANLGLGEGSAIPVGVPLPWPTATPPEGWLKCNGAIFDKVKYPKLALAYPSGILPDLRGEFIRGWDDG
LGVDAGREILSIQGDAIRNISGGIQGRNEATSARLFSSNATGVFRTDGQFGSYAASADVAVGVTDDRLAELFFDASRSVP
TANENRPRNIAFNYIVRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tail fiber family [H]

Homologues:

Organism=Escherichia coli, GI1787829, Length=74, Percent_Identity=48.6486486486487, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081892, Length=76, Percent_Identity=47.3684210526316, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011083 [H]

Pfam domain/function: PF07484 Collar [H]

EC number: NA

Molecular weight: Translated: 27413; Mature: 27413

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKIGDIPNTRADSNGEFTDGNVAGGVPPTLLPAEWFNTIQRELVTVVQDGGLTLDPNDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCC
TQVLAALKKLFLQSGNNLSEIKDAGPTAITQTLANLGLGEGSAIPVGVPLPWPTATPPEG
HHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
WLKCNGAIFDKVKYPKLALAYPSGILPDLRGEFIRGWDDGLGVDAGREILSIQGDAIRNI
EEEECCEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHC
SGGIQGRNEATSARLFSSNATGVFRTDGQFGSYAASADVAVGVTDDRLAELFFDASRSVP
CCCCCCCCCHHHHEEECCCCCEEEEECCCCCCEECCCCEEEECCHHHHHHHHHHHCCCCC
TANENRPRNIAFNYIVRAA
CCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MQKIGDIPNTRADSNGEFTDGNVAGGVPPTLLPAEWFNTIQRELVTVVQDGGLTLDPNDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCC
TQVLAALKKLFLQSGNNLSEIKDAGPTAITQTLANLGLGEGSAIPVGVPLPWPTATPPEG
HHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
WLKCNGAIFDKVKYPKLALAYPSGILPDLRGEFIRGWDDGLGVDAGREILSIQGDAIRNI
EEEECCEEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHC
SGGIQGRNEATSARLFSSNATGVFRTDGQFGSYAASADVAVGVTDDRLAELFFDASRSVP
CCCCCCCCCHHHHEEECCCCCEEEEECCCCCCEECCCCEEEECCHHHHHHHHHHHCCCCC
TANENRPRNIAFNYIVRAA
CCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3894006; 8905232; 9278503 [H]