Click here to switch to the map view.

The map label for this gene is rps4e

Identifier: 161751098

GI number: 161751098

Start: 429356

End: 430087

Strand: Reverse

Name: rps4e

Synonym: ST0421

Alternate gene names: 161751098

Gene position: 430087-429356 (Counterclockwise)

Preceding gene: 15920631

Following gene: 15920629

Centisome position: 15.96

GC content: 29.51

Gene sequence:

>732_bases
TTGGCCCACATAACAAGATTTGAAGCTCCTTGGTTCTTAAATTTAAGTAAAAAAGAGTATAAGTGGACAATAAGAGCTAA
TCCAGGTCCTCACAAACTATCAGAAAGTATTCCCTTAGCCTTATTATTGAAACATTACTTAAATGTTGCCGAAACAACAA
GAGAAGCGAAGAGGTTAGTTGTTGAAGGAAAGATTATGGTTGATGGAAGAGTTAGAAAAGATTATAAGTTTCCTGTAGGA
TTAATGGATGTTATTTCAATTCCTTCCTCAGATTTGTACTTTAGGATTGTTCCAGATAACATAAAATACTTAATGCCAGT
AAAAATTAGTAAAGAAGATGCAAAATATAAATTTGTTAGAATAGTAAATAAAACAACTAATAAAAATGGAAATATACAAT
TGAATTTAGAAGATGGAAGAAATATTCTAATTCCGAAAGAAAAAGTACCAGAAATGAACTATCCTACTTTAACAACACTA
AAAATTGAAATTCCTTCACAAAACATAATTAAAAGTTATGAGCTAAGTGAAGGAAAGTATGCTATAATTATTGGTGGTAG
AAACGTAGGATTACATGGAGTAATAAAAACTATTCAATATGCTAAATATAAGAAAAGGAAATACAGTATTGTTACTATTG
AACAGAAAAATGGAGAATCTGTACAAACTAATTTACAAAATGTTATGGTTATAGGTGATAGCGAAATCGATCCTAATGTA
GGGGTGAGATGA

Upstream 100 bases:

>100_bases
GACCTATCTGATGCAAAAAGGAAAGAAATCATAGAAAGGAAAAGAAAAGCAAGAGAAGAATATTTAAAGAAGAAAGAACA
AACTACGGAGGCGAAATGAA

Downstream 100 bases:

>100_bases
TGGCAGAAACCCAAACAGTTAATCCCATGAGAAAACTACGACTAGAGAAAGTTACTGTCAATATCGGTGTAGGAGAAGCT
GGAGAAAGATTACAAAAAGC

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MAHITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVG
LMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTL
KIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIGDSEIDPNV
GVR

Sequences:

>Translated_243_residues
MAHITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVG
LMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTL
KIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIGDSEIDPNV
GVR
>Mature_242_residues
AHITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGL
MDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLK
IEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIGDSEIDPNVG
VR

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506727, Length=232, Percent_Identity=33.1896551724138, Blast_Score=121, Evalue=6e-28,
Organism=Homo sapiens, GI4506725, Length=230, Percent_Identity=31.304347826087, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI88703062, Length=232, Percent_Identity=30.1724137931034, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17543386, Length=233, Percent_Identity=34.7639484978541, Blast_Score=129, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6322605, Length=232, Percent_Identity=32.3275862068966, Blast_Score=117, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6321997, Length=232, Percent_Identity=32.3275862068966, Blast_Score=117, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24663672, Length=230, Percent_Identity=31.7391304347826, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24663668, Length=230, Percent_Identity=31.7391304347826, Blast_Score=113, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_SULTO (Q975J2)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376299.2
- GeneID:   1458355
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0421
- HOGENOM:   HBG392118
- ProtClustDB:   PRK04313
- BioCyc:   STOK273063:ST0421-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00363

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 27800; Mature: 27669

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLV
CCCEEEECCCEEEEECCCEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEE
VEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVR
EEEEEEECCEECCCCCCCCCHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEE
IVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKY
EEECCCCCCCCEEEEECCCCEEEECHHHCCCCCCCEEEEEEEECCCCHHEEEEEECCCCE
AIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIGDSEIDPNV
EEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEECCEEEEEEECCCCCCCC
GVR
CCC
>Mature Secondary Structure 
AHITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLV
CCEEEECCCEEEEECCCEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEE
VEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVR
EEEEEEECCEECCCCCCCCCHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEE
IVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKY
EEECCCCCCCCEEEEECCCCEEEECHHHCCCCCCCEEEEEEEECCCCHHEEEEEECCCCE
AIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIGDSEIDPNV
EEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEECCEEEEEEECCCCCCCC
GVR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479