Click here to switch to the map view.

The map label for this gene is codA [H]

Identifier: 15922734

GI number: 15922734

Start: 2406658

End: 2407896

Strand: Direct

Name: codA [H]

Synonym: ST2403

Alternate gene names: 15922734

Gene position: 2406658-2407896 (Clockwise)

Preceding gene: 15922733

Following gene: 15922735

Centisome position: 89.31

GC content: 34.79

Gene sequence:

>1239_bases
ATGCTTATCAAAAATGCAAGGCTTTTAGATGGTAGAATAGTTAACATTTACATTGAAGATGGAATAATTAGCTGTTTTAA
CTGCAAAGAGCATGACGAGGAAATTATTGATGCTGAGAATCACTTGGTAATTCCTCCTTATTTTAATATGCATTTTCATC
TAGATAGTGTATTTCTTCCAGTACTTAATAAGAGCGGAACTTTATGGGAAGGTATAAAGATTTGGAAAGATGTTAAAGGT
AAACTGACAGAAGAGGATGTGATAAAAAGGGCTGTTACAGCTGTGAAACTAATGGTTGCACAAGGTACTTTGTGGATAAG
AACACATGTTGATATTACTGAAAAGTCCTTAACTCTTCTTCACTCACTTTTGAAAGTTAGAGAGGAAGTAAAGGAGATTG
CTGATATTCAAATTACTGCATTTCCACAAGATGGTATTTATACTGATAAAGGTAATGACGAGCTATTACGTAAGGCTATT
CAGCTAGGTGCAGATAATGTTGGTTTAATTCCTCATAACGAGATTACAAGAGAAGACGGAGTTAGATCTATAAAATTTGC
AATTAAGTTAGCAAAAGAGTATGGCAAAATAGTTGATGGTCATATTGACGAGACTGATGATCCTAATTCGAGATTTTTAG
AAGTTTTAGCTAAGTATACGTTGGAGTATAATTATGAGGGTAAAGTCTCAGCTGGGCATGTTACAGCTATGCATTCGTGG
GATCCAGCTTATCGATATAGGATTCTACCAATTGTTGCTAGGGCTGGTATTCATGTAATTCCTAATCCTTTAGTTAATGT
TTCTCTTCAAGGAAGGTTTGATAATTATCCTAAAAGGAGAGGTATGGCACCTATTAAAGAGATGTTAAGTTATGGTATAA
ATGTCGCTTTGGGCCATGACTGTATCATGGATCCTTGGTATCCTTTAGGTAGTGGCAATATGTTACATGTCCTCTTTATG
GCTATTCATTTAGACCAAATGTTATCCCCAGACGAGATTATCTCTTCTATCAACTTAATAACATATAATGGTGCTAAGGT
TTGGTCTCTTAAAGATTATGGCATCAACATTGGCAATAGGGCTAATTTACTTATTATGGCTGAAGATGATGTAATTGATC
TTTTGAGATTTATGTCTCCTCCTCTTTACGTTATAAAAGATGGAAAAGTAGTTGCTAAGGAGGGTAAATTAGTCTATTTT
AAGGGAAAATGGGAGAAGGTCTTGAAAAAACCAGTATAG

Upstream 100 bases:

>100_bases
ATATTTCTTATCTTTTTAAGGGTTATAACGTAGAAAAAGAAAAAGACGAAGAAGGTTTATGGATAATTAGGATTAAAAAG
AATTAGTCATATTTCCTTAT

Downstream 100 bases:

>100_bases
ATTTAATAAAAATTCAATCTCAGATAAGAGAAAAGGTAATATTTACGAAAATATATGGTAACACCAAACGACAAAAGAAG
AACCTAACTAAACAATTTTC

Product: cytosine deaminase

Products: NA

Alternate protein names: Cytosine aminohydrolase [H]

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MLIKNARLLDGRIVNIYIEDGIISCFNCKEHDEEIIDAENHLVIPPYFNMHFHLDSVFLPVLNKSGTLWEGIKIWKDVKG
KLTEEDVIKRAVTAVKLMVAQGTLWIRTHVDITEKSLTLLHSLLKVREEVKEIADIQITAFPQDGIYTDKGNDELLRKAI
QLGADNVGLIPHNEITREDGVRSIKFAIKLAKEYGKIVDGHIDETDDPNSRFLEVLAKYTLEYNYEGKVSAGHVTAMHSW
DPAYRYRILPIVARAGIHVIPNPLVNVSLQGRFDNYPKRRGMAPIKEMLSYGINVALGHDCIMDPWYPLGSGNMLHVLFM
AIHLDQMLSPDEIISSINLITYNGAKVWSLKDYGINIGNRANLLIMAEDDVIDLLRFMSPPLYVIKDGKVVAKEGKLVYF
KGKWEKVLKKPV

Sequences:

>Translated_412_residues
MLIKNARLLDGRIVNIYIEDGIISCFNCKEHDEEIIDAENHLVIPPYFNMHFHLDSVFLPVLNKSGTLWEGIKIWKDVKG
KLTEEDVIKRAVTAVKLMVAQGTLWIRTHVDITEKSLTLLHSLLKVREEVKEIADIQITAFPQDGIYTDKGNDELLRKAI
QLGADNVGLIPHNEITREDGVRSIKFAIKLAKEYGKIVDGHIDETDDPNSRFLEVLAKYTLEYNYEGKVSAGHVTAMHSW
DPAYRYRILPIVARAGIHVIPNPLVNVSLQGRFDNYPKRRGMAPIKEMLSYGINVALGHDCIMDPWYPLGSGNMLHVLFM
AIHLDQMLSPDEIISSINLITYNGAKVWSLKDYGINIGNRANLLIMAEDDVIDLLRFMSPPLYVIKDGKVVAKEGKLVYF
KGKWEKVLKKPV
>Mature_412_residues
MLIKNARLLDGRIVNIYIEDGIISCFNCKEHDEEIIDAENHLVIPPYFNMHFHLDSVFLPVLNKSGTLWEGIKIWKDVKG
KLTEEDVIKRAVTAVKLMVAQGTLWIRTHVDITEKSLTLLHSLLKVREEVKEIADIQITAFPQDGIYTDKGNDELLRKAI
QLGADNVGLIPHNEITREDGVRSIKFAIKLAKEYGKIVDGHIDETDDPNSRFLEVLAKYTLEYNYEGKVSAGHVTAMHSW
DPAYRYRILPIVARAGIHVIPNPLVNVSLQGRFDNYPKRRGMAPIKEMLSYGINVALGHDCIMDPWYPLGSGNMLHVLFM
AIHLDQMLSPDEIISSINLITYNGAKVWSLKDYGINIGNRANLLIMAEDDVIDLLRFMSPPLYVIKDGKVVAKEGKLVYF
KGKWEKVLKKPV

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786531, Length=399, Percent_Identity=44.8621553884712, Blast_Score=350, Evalue=8e-98,
Organism=Escherichia coli, GI1786517, Length=354, Percent_Identity=26.5536723163842, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: =3.5.4.1 [H]

Molecular weight: Translated: 46709; Mature: 46709

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKNARLLDGRIVNIYIEDGIISCFNCKEHDEEIIDAENHLVIPPYFNMHFHLDSVFLP
CCCCCCEEECCEEEEEEEECCEEEEECCCCCCHHHHCCCCCEEECCCCCEEEEECCEEEE
VLNKSGTLWEGIKIWKDVKGKLTEEDVIKRAVTAVKLMVAQGTLWIRTHVDITEKSLTLL
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEECCEEEEEEECCCCHHHHHHH
HSLLKVREEVKEIADIQITAFPQDGIYTDKGNDELLRKAIQLGADNVGLIPHNEITREDG
HHHHHHHHHHHHHHCEEEEEECCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHCC
VRSIKFAIKLAKEYGKIVDGHIDETDDPNSRFLEVLAKYTLEYNYEGKVSAGHVTAMHSW
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCEEEEEECC
DPAYRYRILPIVARAGIHVIPNPLVNVSLQGRFDNYPKRRGMAPIKEMLSYGINVALGHD
CHHHEEEEEEHHHHCCCEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEECCC
CIMDPWYPLGSGNMLHVLFMAIHLDQMLSPDEIISSINLITYNGAKVWSLKDYGINIGNR
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCEEEEEEEECCCCCCCC
ANLLIMAEDDVIDLLRFMSPPLYVIKDGKVVAKEGKLVYFKGKWEKVLKKPV
CCEEEEECCCHHHHHHHCCCCEEEEECCEEEEECCCEEEEECCHHHHHCCCC
>Mature Secondary Structure
MLIKNARLLDGRIVNIYIEDGIISCFNCKEHDEEIIDAENHLVIPPYFNMHFHLDSVFLP
CCCCCCEEECCEEEEEEEECCEEEEECCCCCCHHHHCCCCCEEECCCCCEEEEECCEEEE
VLNKSGTLWEGIKIWKDVKGKLTEEDVIKRAVTAVKLMVAQGTLWIRTHVDITEKSLTLL
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEECCEEEEEEECCCCHHHHHHH
HSLLKVREEVKEIADIQITAFPQDGIYTDKGNDELLRKAIQLGADNVGLIPHNEITREDG
HHHHHHHHHHHHHHCEEEEEECCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHCC
VRSIKFAIKLAKEYGKIVDGHIDETDDPNSRFLEVLAKYTLEYNYEGKVSAGHVTAMHSW
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCEEEEEECC
DPAYRYRILPIVARAGIHVIPNPLVNVSLQGRFDNYPKRRGMAPIKEMLSYGINVALGHD
CHHHEEEEEEHHHHCCCEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEECCC
CIMDPWYPLGSGNMLHVLFMAIHLDQMLSPDEIISSINLITYNGAKVWSLKDYGINIGNR
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCEEEEEEEECCCCCCCC
ANLLIMAEDDVIDLLRFMSPPLYVIKDGKVVAKEGKLVYFKGKWEKVLKKPV
CCEEEEECCCHHHHHHHCCCCEEEEECCEEEEECCCEEEEECCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1640834; 8450832; 9278503 [H]