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The map label for this gene is ymdB [C]

Identifier: 15922714

GI number: 15922714

Start: 2383811

End: 2384359

Strand: Direct

Name: ymdB [C]

Synonym: ST2383

Alternate gene names: 15922714

Gene position: 2383811-2384359 (Clockwise)

Preceding gene: 15922713

Following gene: 15922724

Centisome position: 88.46

GC content: 32.42

Gene sequence:

>549_bases
ATGATAGTTAAAATCATTAAAGGAGATATAACTGAAATTGAAGCTGAAGCTATAGTTAATGCTGCAAATTCCTATTTAGA
ACATGGTGGAGGAGTAGCTAGAGCCATTGTAGAAAAAGGAGGTTATATAATTCAAAAAGAAAGTAGAGAGTATGTAAGGA
AATATGGACCAGTACCAACTGGTGGAGTCGCTGTTACTTCTGCAGGAAAATTAAAAGCAAAATACGTAATTCATGCAGTA
GGTCCAAGATATGGAATAGAAGGGGAGGAGAAATTAGAAGAGGCTATAAGAAATGCACTTAGAAAAGCTGAGGAGTTAAA
GTTATCTAGTATAGCTCTTCCAGCAATTTCTACTGGTATATATGGTTATCCATATGAAATATGCGCAGAGAAAATGGTAA
AAGTAATTAAAGAAGAGTATACTAACTTTAAACATTTAAATACTATAATAGTTTCCCTTTACTCAGAGGAAGCATACAAT
ATTTTTGTGAACATTTTTGAGAGAGAATTAGCTAAAGAAAAAAACATTACCTTGAAAATGTCTCCTTAA

Upstream 100 bases:

>100_bases
TATTTACTGCTGTTATTCATTTCCAAAAAATAGATGAACTTCGAGGGTTAATAGATTTAGTTAATTCTGCATTCGATAAA
GCTTATTGGAGTGCTAAATC

Downstream 100 bases:

>100_bases
AATCAAAAACTATGCAAATTTAAAGTAAGGGAAAATTCCTTCCGTAACTCTAAGTCTCGGCGTAATGATGTTTTCCCCTT
TTCTTATACATATGAAGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MIVKIIKGDITEIEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPVPTGGVAVTSAGKLKAKYVIHAV
GPRYGIEGEEKLEEAIRNALRKAEELKLSSIALPAISTGIYGYPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYN
IFVNIFERELAKEKNITLKMSP

Sequences:

>Translated_182_residues
MIVKIIKGDITEIEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPVPTGGVAVTSAGKLKAKYVIHAV
GPRYGIEGEEKLEEAIRNALRKAEELKLSSIALPAISTGIYGYPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYN
IFVNIFERELAKEKNITLKMSP
>Mature_182_residues
MIVKIIKGDITEIEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPVPTGGVAVTSAGKLKAKYVIHAV
GPRYGIEGEEKLEEAIRNALRKAEELKLSSIALPAISTGIYGYPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYN
IFVNIFERELAKEKNITLKMSP

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI226371710, Length=143, Percent_Identity=41.2587412587413, Blast_Score=111, Evalue=4e-25,
Organism=Homo sapiens, GI226371706, Length=143, Percent_Identity=41.2587412587413, Blast_Score=111, Evalue=4e-25,
Organism=Homo sapiens, GI226371716, Length=143, Percent_Identity=41.2587412587413, Blast_Score=110, Evalue=5e-25,
Organism=Homo sapiens, GI226371714, Length=143, Percent_Identity=41.2587412587413, Blast_Score=110, Evalue=5e-25,
Organism=Homo sapiens, GI226371712, Length=143, Percent_Identity=41.2587412587413, Blast_Score=110, Evalue=5e-25,
Organism=Homo sapiens, GI226371718, Length=143, Percent_Identity=41.2587412587413, Blast_Score=110, Evalue=6e-25,
Organism=Homo sapiens, GI154813199, Length=144, Percent_Identity=36.8055555555556, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI20336746, Length=173, Percent_Identity=32.3699421965318, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI13569840, Length=165, Percent_Identity=35.1515151515151, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI117968621, Length=165, Percent_Identity=38.1818181818182, Blast_Score=90, Evalue=9e-19,
Organism=Homo sapiens, GI93141018, Length=167, Percent_Identity=31.7365269461078, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI93141020, Length=167, Percent_Identity=31.7365269461078, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI4758496, Length=167, Percent_Identity=31.7365269461078, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI8923920, Length=176, Percent_Identity=28.4090909090909, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI165377137, Length=166, Percent_Identity=31.3253012048193, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI207450721, Length=139, Percent_Identity=29.4964028776978, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI8923143, Length=139, Percent_Identity=29.4964028776978, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1787283, Length=176, Percent_Identity=36.9318181818182, Blast_Score=106, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17538214, Length=141, Percent_Identity=37.5886524822695, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24586353, Length=183, Percent_Identity=28.4153005464481, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2383_SULTO (Q96XY5)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_378383.1
- ProteinModelPortal:   Q96XY5
- SMR:   Q96XY5
- GeneID:   1460465
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST2383
- NMPDR:   fig|273063.1.peg.2551
- HOGENOM:   HBG682503
- OMA:   SAGIYGC
- ProtClustDB:   PRK00431
- BioCyc:   STOK273063:ST2383-MONOMER
- HAMAP:   MF_01205_A
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 20184; Mature: 20184

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKIIKGDITEIEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPVPT
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCC
GGVAVTSAGKLKAKYVIHAVGPRYGIEGEEKLEEAIRNALRKAEELKLSSIALPAISTGI
CCEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YGYPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYNIFVNIFERELAKEKNITLKM
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEE
SP
CC
>Mature Secondary Structure
MIVKIIKGDITEIEAEAIVNAANSYLEHGGGVARAIVEKGGYIIQKESREYVRKYGPVPT
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCC
GGVAVTSAGKLKAKYVIHAVGPRYGIEGEEKLEEAIRNALRKAEELKLSSIALPAISTGI
CCEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YGYPYEICAEKMVKVIKEEYTNFKHLNTIIVSLYSEEAYNIFVNIFERELAKEKNITLKM
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEE
SP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479