| Definition | Sulfolobus tokodaii str. 7 chromosome, complete genome. |
|---|---|
| Accession | NC_003106 |
| Length | 2,694,756 |
Click here to switch to the map view.
The map label for this gene is rad50 [H]
Identifier: 15922434
GI number: 15922434
Start: 2116340
End: 2118988
Strand: Direct
Name: rad50 [H]
Synonym: ST2108
Alternate gene names: 15922434
Gene position: 2116340-2118988 (Clockwise)
Preceding gene: 15922433
Following gene: 15922435
Centisome position: 78.54
GC content: 27.41
Gene sequence:
>2649_bases GTGTTGAAAATGATAATAAGAAGAATTGACATTGAAAATTTTTTAAGTCATGATAGGTCATTAATAGAATTTAAGGGAAC TGTTAACGTTATAATAGGACATAACGGTGCAGGCAAAAGCTCGATAATCGATGCAATAAGTTTTAGTCTATTTAGGAAAT CATTGAGAGATGCAAAGAAACAAGAAGATTTAATAAAACGAGGAGCAGGCAGAGCTACTGTAACTTTATATCTAGAAAAT AAAGGTAAAATCTATGTTATAAAAAGAAATGCTCCAAATCAATATACGTCAGAAGATACAATCTCTGAACTAACTAATGA TACAAGAAGAACTATTGCAAGAGGTGCTACTACAGTATCTCAAAAAATAAAAGAGCTGCTTAATCTAGATGAAGAAGTAT TAAAATCTACTATAATAGTAGGCCAAGGTAAAATTGAGTCTGTGTTCGAAAATCTACCAGATGTAACCAAAAAAATATTA AAGATTGACAAAATCGAAAAGCTTAGGGATTCTAACGGTCCTATAAAAGAAGTCATGGATAAAATAAACAATAAAATTAT TGAGCTTCAGAGTTTAGAAAAATATAAAAACGAAAGTGAAAACCAAAAAATTCAAAAAGAGAAAGAACTAGAAAATATAA AAAGAGAACTGGAGGATTTAAATATAAAAGAAGAAAAAGAAAGGAAAAAGTATGAGGACATAGTAAAATTAAATGAGGAA GAAGAGAAAAAAGAGAAAAGATACGTAGAACTTATATCACTCCTAAATAAACTAAAAGACGATATTTCCGAACTAAGAGA GGAGGTTAAAGATGAAAATAGACTAAGAGAGGAGAAAGAAAAATTAGAGAAAGATATACTAGAAAAAGATAAATTAATAG AGGAGAAAGAAAAAATAATAGAAGCTCAGAACAAAATTAAATTAGCCCAAGAAAAAGAAAAATCATTAAAAACGATAAAG ATAAACTTAACTGATCTAGAAGAAAAATTAAAGAGAAAAAGAGAACTAGAAGAAGATTATAAAAAATATATTGAGATTAA AGGAGAACTAGAAGAGTTAGAAGAAAAAGAACGAAAATTTAATTCTCTTTCAGATAGATTAAAATCTTTAAAGATAAAAC TTAGTGAAATTGAGAGCAAAATTTCTAATAGAAAAATTAGTATAAACATAGAAGAATTAGATAAGGAATTACAAAAATTA AATGAGGACCTAAATAATAAAAATCAAGAAAGAGAAAAATTAGCTAGCCAACTAGGTGAAATAAAAGGAAGAATTGAAGA GTTAAATAAACTTCTAGGAAATTTAAACCAAGTTAAGGGAAATGTATGCCCAGTATGTGGCAGAGAACTTTCTGATGATC ATAAAAGAAAAATACAAAACGAAATCATAGAAAAATTAAAAGAATTAGATGAATTAAATAAAAAATTTAAATTAGAAATA AACAAGATCAATGGACTAATTTCAGAATTAAATCAGATCATAAATAAAAAGTCAAAAGAAAAGGACATAGCGATTAGGAA TTTAGCAGATTATAATAATTTGTTAACACAACAACAAGAACTAAGAAAAGAAATAGAAGAAATAGAAAATGAAATAGAAC GACTAAGTATATATCATGAAAAATATATAAGATTAAAAGAGGAAGAAAAAAATCTTAAACCGAAATATGAAGAGTACTTG AAGTATTACGATGTAACTGAAGAGAAGATTAGAGAGTTAGAAAGACAGAAAATAGAATTAGAAAAGGAAATAGAAGAAAT TATGAATAAGGTGAGAGAATATTATAATACTGACTTAACTCAGAAAATTAGAGATATTGAAAAGAGAATACAAGAAATAA AAGGAAAGGAAAATAAGCTACGTGAATTAGATACATTATTAGCTAAAATCGAAACAGCAAAACAAAAAATTAAGCAAAAC GAAGAAGAAATTAAGAAGCTAACTGATGAACTTCAACTTTTGAATTTTGATCCTAATAGATTTCAGCAAATAAAAAGAGA AAAAGAGGTGCTGGAAAAAATACTTGGCGAGATTAACAGTAAAAAAGGTGAATTATTAGGTAAAAAAGAGGTGCTGGAAA ATGATATTAAAAGATTAGAGGAGCAAATAAAAGATTATGAAGAAAAATTAAAAAATAAACAAAAATTAATTACCGCTTAC GATAAACTCAAAAAGTTAAGAGAGCATTTAGCAGAGGATAAATTACAGGCTTATTTAATGAATACTGTAAAAAGCTTGGT AGAAGATTCTTTAAATAGTATTTTATCTCGATTTGAATTATCATTTACCAGAGTTGAGGTTGATTTCAACGATAAGAATG GAATTTATGCATATACTACTTCTGGTCAAAGGCTTCCAGTTAATCTATTAAGCGGAGGAGAAAGAGTTTCAATAGCCCTA GCATTAAGGTTAGCTATTGCTAAATCTCTTATGAACGAGGTAGGATTTCTAATTTTAGATGAACCCACAGTAAATCTTGA TGAGTATAGAAAGAAAGAGTTAATAGACATAATTAGATCAACAGTTGAAGTAGTACCCCAAATTATTGTAGTAACCCATG ATGAAGAGTTATTACAAGCTGGAGATTATATTATAAGGTTAGAAAAGAGAGGAGATTCTAGTAAAGTTGAGGTGATAAAC AATGATTAA
Upstream 100 bases:
>100_bases ATTGCTAATTTTTCAGAGACTGAAGCCAGAATGATAGTTGATATAATTAACCGAGCTGATGAAAGAGAATATGTTAAGGA AGAATTAATGAAAATGATTG
Downstream 100 bases:
>100_bases GGATGTCTATGAGCTATTATTATCTAGAAAAAATGAAATTGAAAAACAGATTAGTTTGTTAGATGAGACCTCCAATAATT TGTTAAAAGAAAAAATAAAA
Product: purine NTPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 882; Mature: 882
Protein sequence:
>882_residues MLKMIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKKQEDLIKRGAGRATVTLYLEN KGKIYVIKRNAPNQYTSEDTISELTNDTRRTIARGATTVSQKIKELLNLDEEVLKSTIIVGQGKIESVFENLPDVTKKIL KIDKIEKLRDSNGPIKEVMDKINNKIIELQSLEKYKNESENQKIQKEKELENIKRELEDLNIKEEKERKKYEDIVKLNEE EEKKEKRYVELISLLNKLKDDISELREEVKDENRLREEKEKLEKDILEKDKLIEEKEKIIEAQNKIKLAQEKEKSLKTIK INLTDLEEKLKRKRELEEDYKKYIEIKGELEELEEKERKFNSLSDRLKSLKIKLSEIESKISNRKISINIEELDKELQKL NEDLNNKNQEREKLASQLGEIKGRIEELNKLLGNLNQVKGNVCPVCGRELSDDHKRKIQNEIIEKLKELDELNKKFKLEI NKINGLISELNQIINKKSKEKDIAIRNLADYNNLLTQQQELRKEIEEIENEIERLSIYHEKYIRLKEEEKNLKPKYEEYL KYYDVTEEKIRELERQKIELEKEIEEIMNKVREYYNTDLTQKIRDIEKRIQEIKGKENKLRELDTLLAKIETAKQKIKQN EEEIKKLTDELQLLNFDPNRFQQIKREKEVLEKILGEINSKKGELLGKKEVLENDIKRLEEQIKDYEEKLKNKQKLITAY DKLKKLREHLAEDKLQAYLMNTVKSLVEDSLNSILSRFELSFTRVEVDFNDKNGIYAYTTSGQRLPVNLLSGGERVSIAL ALRLAIAKSLMNEVGFLILDEPTVNLDEYRKKELIDIIRSTVEVVPQIIVVTHDEELLQAGDYIIRLEKRGDSSKVEVIN ND
Sequences:
>Translated_882_residues MLKMIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKKQEDLIKRGAGRATVTLYLEN KGKIYVIKRNAPNQYTSEDTISELTNDTRRTIARGATTVSQKIKELLNLDEEVLKSTIIVGQGKIESVFENLPDVTKKIL KIDKIEKLRDSNGPIKEVMDKINNKIIELQSLEKYKNESENQKIQKEKELENIKRELEDLNIKEEKERKKYEDIVKLNEE EEKKEKRYVELISLLNKLKDDISELREEVKDENRLREEKEKLEKDILEKDKLIEEKEKIIEAQNKIKLAQEKEKSLKTIK INLTDLEEKLKRKRELEEDYKKYIEIKGELEELEEKERKFNSLSDRLKSLKIKLSEIESKISNRKISINIEELDKELQKL NEDLNNKNQEREKLASQLGEIKGRIEELNKLLGNLNQVKGNVCPVCGRELSDDHKRKIQNEIIEKLKELDELNKKFKLEI NKINGLISELNQIINKKSKEKDIAIRNLADYNNLLTQQQELRKEIEEIENEIERLSIYHEKYIRLKEEEKNLKPKYEEYL KYYDVTEEKIRELERQKIELEKEIEEIMNKVREYYNTDLTQKIRDIEKRIQEIKGKENKLRELDTLLAKIETAKQKIKQN EEEIKKLTDELQLLNFDPNRFQQIKREKEVLEKILGEINSKKGELLGKKEVLENDIKRLEEQIKDYEEKLKNKQKLITAY DKLKKLREHLAEDKLQAYLMNTVKSLVEDSLNSILSRFELSFTRVEVDFNDKNGIYAYTTSGQRLPVNLLSGGERVSIAL ALRLAIAKSLMNEVGFLILDEPTVNLDEYRKKELIDIIRSTVEVVPQIIVVTHDEELLQAGDYIIRLEKRGDSSKVEVIN ND >Mature_882_residues MLKMIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKKQEDLIKRGAGRATVTLYLEN KGKIYVIKRNAPNQYTSEDTISELTNDTRRTIARGATTVSQKIKELLNLDEEVLKSTIIVGQGKIESVFENLPDVTKKIL KIDKIEKLRDSNGPIKEVMDKINNKIIELQSLEKYKNESENQKIQKEKELENIKRELEDLNIKEEKERKKYEDIVKLNEE EEKKEKRYVELISLLNKLKDDISELREEVKDENRLREEKEKLEKDILEKDKLIEEKEKIIEAQNKIKLAQEKEKSLKTIK INLTDLEEKLKRKRELEEDYKKYIEIKGELEELEEKERKFNSLSDRLKSLKIKLSEIESKISNRKISINIEELDKELQKL NEDLNNKNQEREKLASQLGEIKGRIEELNKLLGNLNQVKGNVCPVCGRELSDDHKRKIQNEIIEKLKELDELNKKFKLEI NKINGLISELNQIINKKSKEKDIAIRNLADYNNLLTQQQELRKEIEEIENEIERLSIYHEKYIRLKEEEKNLKPKYEEYL KYYDVTEEKIRELERQKIELEKEIEEIMNKVREYYNTDLTQKIRDIEKRIQEIKGKENKLRELDTLLAKIETAKQKIKQN EEEIKKLTDELQLLNFDPNRFQQIKREKEVLEKILGEINSKKGELLGKKEVLENDIKRLEEQIKDYEEKLKNKQKLITAY DKLKKLREHLAEDKLQAYLMNTVKSLVEDSLNSILSRFELSFTRVEVDFNDKNGIYAYTTSGQRLPVNLLSGGERVSIAL ALRLAIAKSLMNEVGFLILDEPTVNLDEYRKKELIDIIRSTVEVVPQIIVVTHDEELLQAGDYIIRLEKRGDSSKVEVIN ND
Specific function: Involved in DNA double-strand break repair (DSBR). The rad50/mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of mre11 by unwinding and
COG id: COG0419
COG function: function code L; ATPase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 zinc-hook domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022982 - InterPro: IPR007517 - InterPro: IPR003395 - InterPro: IPR013134 [H]
Pfam domain/function: PF04423 Rad50_zn_hook; PF02463 SMC_N [H]
EC number: NA
Molecular weight: Translated: 103862; Mature: 103862
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS51131 ZN_HOOK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKMIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKK CHHHHHHHHHHHHHHHCCCHHEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH QEDLIKRGAGRATVTLYLENKGKIYVIKRNAPNQYTSEDTISELTNDTRRTIARGATTVS HHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QKIKELLNLDEEVLKSTIIVGQGKIESVFENLPDVTKKILKIDKIEKLRDSNGPIKEVMD HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH KINNKIIELQSLEKYKNESENQKIQKEKELENIKRELEDLNIKEEKERKKYEDIVKLNEE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH EEKKEKRYVELISLLNKLKDDISELREEVKDENRLREEKEKLEKDILEKDKLIEEKEKII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQNKIKLAQEKEKSLKTIKINLTDLEEKLKRKRELEEDYKKYIEIKGELEELEEKERKF HHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH NSLSDRLKSLKIKLSEIESKISNRKISINIEELDKELQKLNEDLNNKNQEREKLASQLGE HHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IKGRIEELNKLLGNLNQVKGNVCPVCGRELSDDHKRKIQNEIIEKLKELDELNKKFKLEI HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHH NKINGLISELNQIINKKSKEKDIAIRNLADYNNLLTQQQELRKEIEEIENEIERLSIYHE HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KYIRLKEEEKNLKPKYEEYLKYYDVTEEKIRELERQKIELEKEIEEIMNKVREYYNTDLT HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QKIRDIEKRIQEIKGKENKLRELDTLLAKIETAKQKIKQNEEEIKKLTDELQLLNFDPNR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH FQQIKREKEVLEKILGEINSKKGELLGKKEVLENDIKRLEEQIKDYEEKLKNKQKLITAY HHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKLKKLREHLAEDKLQAYLMNTVKSLVEDSLNSILSRFELSFTRVEVDFNDKNGIYAYTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEC SGQRLPVNLLSGGERVSIALALRLAIAKSLMNEVGFLILDEPTVNLDEYRKKELIDIIRS CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH TVEVVPQIIVVTHDEELLQAGDYIIRLEKRGDSSKVEVINND HHHHHHHHEEEECCHHHHHCCCCEEEEECCCCCCCEEEECCC >Mature Secondary Structure MLKMIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKK CHHHHHHHHHHHHHHHCCCHHEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH QEDLIKRGAGRATVTLYLENKGKIYVIKRNAPNQYTSEDTISELTNDTRRTIARGATTVS HHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QKIKELLNLDEEVLKSTIIVGQGKIESVFENLPDVTKKILKIDKIEKLRDSNGPIKEVMD HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH KINNKIIELQSLEKYKNESENQKIQKEKELENIKRELEDLNIKEEKERKKYEDIVKLNEE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH EEKKEKRYVELISLLNKLKDDISELREEVKDENRLREEKEKLEKDILEKDKLIEEKEKII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQNKIKLAQEKEKSLKTIKINLTDLEEKLKRKRELEEDYKKYIEIKGELEELEEKERKF HHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH NSLSDRLKSLKIKLSEIESKISNRKISINIEELDKELQKLNEDLNNKNQEREKLASQLGE HHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IKGRIEELNKLLGNLNQVKGNVCPVCGRELSDDHKRKIQNEIIEKLKELDELNKKFKLEI HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHH NKINGLISELNQIINKKSKEKDIAIRNLADYNNLLTQQQELRKEIEEIENEIERLSIYHE HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KYIRLKEEEKNLKPKYEEYLKYYDVTEEKIRELERQKIELEKEIEEIMNKVREYYNTDLT HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QKIRDIEKRIQEIKGKENKLRELDTLLAKIETAKQKIKQNEEEIKKLTDELQLLNFDPNR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH FQQIKREKEVLEKILGEINSKKGELLGKKEVLENDIKRLEEQIKDYEEKLKNKQKLITAY HHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKLKKLREHLAEDKLQAYLMNTVKSLVEDSLNSILSRFELSFTRVEVDFNDKNGIYAYTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEC SGQRLPVNLLSGGERVSIALALRLAIAKSLMNEVGFLILDEPTVNLDEYRKKELIDIIRS CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH TVEVVPQIIVVTHDEELLQAGDYIIRLEKRGDSSKVEVINND HHHHHHHHEEEECCHHHHHCCCCEEEEECCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11572479 [H]