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The map label for this gene is ydcM [C]

Identifier: 15922221

GI number: 15922221

Start: 1908184

End: 1909488

Strand: Direct

Name: ydcM [C]

Synonym: ST1906

Alternate gene names: 15922221

Gene position: 1908184-1909488 (Clockwise)

Preceding gene: 15922219

Following gene: 15922222

Centisome position: 70.81

GC content: 47.59

Gene sequence:

>1305_bases
GTGAAGAGGACTAACGTAGTTAAACTACAAGTAGACAAGCAAACCCACGAAAGACTGAAGGAGTTGGCTATTACCACAGC
GAAGTGTTGGAACGAAGTGAACTGGTTAAGGATGCAACAGTTCAAGGAAGGGGAGAGAGTAGACTTCAACGGTTCTGAGA
AGACGGTATATTCAAAATACAAAACAGTGCTCAAAGTAAACGCAGGACAGGTCGCGAGGAAGAACGCGGAGGACTGGAGG
AGCTTCTTCGCGTTAATAGAGATGAAAAAGGAGGGAAAACTACCGAGCTGGTTCAAACCGAGACCTCCAGGGTACTGGAA
GGAAAACGGCAAGTATAAGCTCATGGTTATTATTAGAAACGATAGGTATGTGGTAAACGAAGAGAAGAGGGAAATTTACT
TGAAGGACTTCCACCTCACCCTCAAGTTTAAGGGGAAACTCAAGTGGGAAGGAAAACAAGGCAGACTAGAGATAATTTAC
AACGAGGCAAGGAAATCGTGGTATGCCCATATACCAGTGGAGTTAGAACATAAAGTAGAGAAGGGTAATTTGACGGCTTC
AGTAGACTTAGGCATAGTTAACCTAGCTACAGTGTACGTCGAAGACGGGTCGTGGTACTTGTTTAAGAGTGGGTCTGTTT
TATCCCAATACGAATATTACAGCAAGAAAATACAAGTTGCCCAGAAGACCTTAGCGAGGCACAAGCAGAGGAGAAGCAGG
AAGCTGAAGCTCTTGTACGAGAAGAGGAGTAGGTTCCTAAAACACGCCTTAAACAGCATGGTTAGGAAGGTAATGGAGCT
ATTGAAGGATAAAGGAGTAGGCAAGATAGTTGTAGGTCATCCTAAAGACATAGTGAGGGGTCGTGGAAATAAGCTGACGG
TCAACTTCTGGAACTACGGCTATGTCATCAAGAGGTTTAAGGGAGTCGGGGAGGAGGTTGGCATAGACGTTGTCGAGGTC
AGTGAGGCTTACACTTCAAAGACTTGTTCCCTGTGCGGGGAAGCCCACAAAAGTGGGCGTATTAAACGCGGTTTGTTTAA
GTGTCCCCGCACGGGGAAGGTAATAAATGCGGACTTAAACGGTGCGATAAACATCCTACATATCCCCGAGTCCCGAGGAG
CTAGGGGCGGAGGGCAACCCCTAGCTAGGGATAGGGGTAATGGGCTGAAGGCCCAGCCCGTGGTCTACCGCTGGACGAAC
GGAGCGGGGTGGATGCTTTACGCACCCACTAGCTATGAAGTTGTGAGGATGAAGGTGGTAAACCACAAACCTGTGAACCA
CCCTAAGGGAACCCTCGCCCTTTAG

Upstream 100 bases:

>100_bases
AACGGGAAGCTCTGGACTAGAAGCTACTTCGTATCTACCGCAGGTAACGTATCCAGCGAGACGATAAAGAAGTACATTGA
AGAACAGTGGGCGAAAGAGA

Downstream 100 bases:

>100_bases
GGCGGAGAGGAGGTGGTCAGATTTGTAATGCACCACTTAAGATATGACCAGATGCACATCCACCAGCCATTCTGGCACCA
AACATCATTAATGCAGTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: IS Element ISTsi3 OrfB Probably Transposase; Transposase ISC; Neutral Protease; Transposase And Inactivated Derivatives; C-Terminal Of Inactivated Transposase; ISChy8 Transposase; IS Element ISDka2 OrfB; IS Element ISTsi2 OrfB Probably Transposase

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MKRTNVVKLQVDKQTHERLKELAITTAKCWNEVNWLRMQQFKEGERVDFNGSEKTVYSKYKTVLKVNAGQVARKNAEDWR
SFFALIEMKKEGKLPSWFKPRPPGYWKENGKYKLMVIIRNDRYVVNEEKREIYLKDFHLTLKFKGKLKWEGKQGRLEIIY
NEARKSWYAHIPVELEHKVEKGNLTASVDLGIVNLATVYVEDGSWYLFKSGSVLSQYEYYSKKIQVAQKTLARHKQRRSR
KLKLLYEKRSRFLKHALNSMVRKVMELLKDKGVGKIVVGHPKDIVRGRGNKLTVNFWNYGYVIKRFKGVGEEVGIDVVEV
SEAYTSKTCSLCGEAHKSGRIKRGLFKCPRTGKVINADLNGAINILHIPESRGARGGGQPLARDRGNGLKAQPVVYRWTN
GAGWMLYAPTSYEVVRMKVVNHKPVNHPKGTLAL

Sequences:

>Translated_434_residues
MKRTNVVKLQVDKQTHERLKELAITTAKCWNEVNWLRMQQFKEGERVDFNGSEKTVYSKYKTVLKVNAGQVARKNAEDWR
SFFALIEMKKEGKLPSWFKPRPPGYWKENGKYKLMVIIRNDRYVVNEEKREIYLKDFHLTLKFKGKLKWEGKQGRLEIIY
NEARKSWYAHIPVELEHKVEKGNLTASVDLGIVNLATVYVEDGSWYLFKSGSVLSQYEYYSKKIQVAQKTLARHKQRRSR
KLKLLYEKRSRFLKHALNSMVRKVMELLKDKGVGKIVVGHPKDIVRGRGNKLTVNFWNYGYVIKRFKGVGEEVGIDVVEV
SEAYTSKTCSLCGEAHKSGRIKRGLFKCPRTGKVINADLNGAINILHIPESRGARGGGQPLARDRGNGLKAQPVVYRWTN
GAGWMLYAPTSYEVVRMKVVNHKPVNHPKGTLAL
>Mature_434_residues
MKRTNVVKLQVDKQTHERLKELAITTAKCWNEVNWLRMQQFKEGERVDFNGSEKTVYSKYKTVLKVNAGQVARKNAEDWR
SFFALIEMKKEGKLPSWFKPRPPGYWKENGKYKLMVIIRNDRYVVNEEKREIYLKDFHLTLKFKGKLKWEGKQGRLEIIY
NEARKSWYAHIPVELEHKVEKGNLTASVDLGIVNLATVYVEDGSWYLFKSGSVLSQYEYYSKKIQVAQKTLARHKQRRSR
KLKLLYEKRSRFLKHALNSMVRKVMELLKDKGVGKIVVGHPKDIVRGRGNKLTVNFWNYGYVIKRFKGVGEEVGIDVVEV
SEAYTSKTCSLCGEAHKSGRIKRGLFKCPRTGKVINADLNGAINILHIPESRGARGGGQPLARDRGNGLKAQPVVYRWTN
GAGWMLYAPTSYEVVRMKVVNHKPVNHPKGTLAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI288549314, Length=251, Percent_Identity=27.4900398406374, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50060; Mature: 50060

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTNVVKLQVDKQTHERLKELAITTAKCWNEVNWLRMQQFKEGERVDFNGSEKTVYSKY
CCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCCCHHHHHHE
KTVLKVNAGQVARKNAEDWRSFFALIEMKKEGKLPSWFKPRPPGYWKENGKYKLMVIIRN
EEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
DRYVVNEEKREIYLKDFHLTLKFKGKLKWEGKQGRLEIIYNEARKSWYAHIPVELEHKVE
CEEEECCCCCEEEEEEEEEEEEEECEEEECCCCCCEEEEEECCCCCEEEECCEEEEEEEC
KGNLTASVDLGIVNLATVYVEDGSWYLFKSGSVLSQYEYYSKKIQVAQKTLARHKQRRSR
CCCEEEEEEECEEEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKLLYEKRSRFLKHALNSMVRKVMELLKDKGVGKIVVGHPKDIVRGRGNKLTVNFWNYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEEEEECCC
YVIKRFKGVGEEVGIDVVEVSEAYTSKTCSLCGEAHKSGRIKRGLFKCPRTGKVINADLN
HHHHHHHCCCHHHCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCC
GAINILHIPESRGARGGGQPLARDRGNGLKAQPVVYRWTNGAGWMLYAPTSYEVVRMKVV
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEEEEE
NHKPVNHPKGTLAL
CCCCCCCCCCCCCC
>Mature Secondary Structure
MKRTNVVKLQVDKQTHERLKELAITTAKCWNEVNWLRMQQFKEGERVDFNGSEKTVYSKY
CCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCCCHHHHHHE
KTVLKVNAGQVARKNAEDWRSFFALIEMKKEGKLPSWFKPRPPGYWKENGKYKLMVIIRN
EEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
DRYVVNEEKREIYLKDFHLTLKFKGKLKWEGKQGRLEIIYNEARKSWYAHIPVELEHKVE
CEEEECCCCCEEEEEEEEEEEEEECEEEECCCCCCEEEEEECCCCCEEEECCEEEEEEEC
KGNLTASVDLGIVNLATVYVEDGSWYLFKSGSVLSQYEYYSKKIQVAQKTLARHKQRRSR
CCCEEEEEEECEEEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKLLYEKRSRFLKHALNSMVRKVMELLKDKGVGKIVVGHPKDIVRGRGNKLTVNFWNYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEEEEECCC
YVIKRFKGVGEEVGIDVVEVSEAYTSKTCSLCGEAHKSGRIKRGLFKCPRTGKVINADLN
HHHHHHHCCCHHHCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCC
GAINILHIPESRGARGGGQPLARDRGNGLKAQPVVYRWTNGAGWMLYAPTSYEVVRMKVV
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEEEEE
NHKPVNHPKGTLAL
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA