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The map label for this gene is nrfC [H]

Identifier: 15922151

GI number: 15922151

Start: 1848032

End: 1848844

Strand: Reverse

Name: nrfC [H]

Synonym: ST1839

Alternate gene names: 15922151

Gene position: 1848844-1848032 (Counterclockwise)

Preceding gene: 15922152

Following gene: 15922150

Centisome position: 68.61

GC content: 38.25

Gene sequence:

>813_bases
ATGTCCTCTATAACTCTAAATCCGAAAGAAGGTGGAATTCAAAAATCCCTTCCTTTCACGCCAAAGAAAAACTATGCTAT
AATAACTGACTTAAACAAGTGTTTCGGCTGTGCTGGCTGTCAAATGTCATGTAAAGAATGGAACACCTCTGGAATGTTTG
GACCGTTACCAGATCTAAATCCATATGGAGAATTAGATGTTATGTTCTGGCTAAGAGTGCTTTATGTTGAAGTTGGTAAC
TATCCGCAAACTAAAGTTTACAACATCCCAATAAACTGTTTCCACTGTATGAATGCCCCTTGTGTACCAGTATGTCCAGT
TGGTGCTACGTTTAAGAGAGAAGAAGACGGAATAGTATTAGTAGATTATAATGAGTGCATAGGAACTAAATACTGTATTT
ATGCATGTCCTTACGGTAATAGATTCTTCGATTATGTTGAAGGTGTTACAAAGAAGTGTACTCATTGTTTTGATAGAATT
TATGATCCAACACTACCGCCAGAAGAAAGAATCCCAGCTTGTATACACGGCTGCATGGTTCAAGCGAGAATATGGGCTGA
TAGATTAGATCCCACTGACCCTGGTAATATACTGTTTATAGATAAAGGTGGATTTGTTTTAGGTCCAGAAACCGGTGCTG
ATCCAGCTAGCGGTTATTTACCGTGGCGTAGTGCATACGCCGCTGATAACGATGTTGAATTACTTAGCGAGTCAGAATAT
TATAACGTATGGACTTCAAATGGTGTAGTTATTTTAGGATCTCAAGGAAATAACTCTACCTACACAGAACAAAACGGTAA
TTCTACAAGTTAA

Upstream 100 bases:

>100_bases
ACTATCAGCTAGGTAGTTATAAGATAAGGTACGGATTTGCGGGTGAGTCCTCATCAAGTTAGTCTTTCTTTTTTATGAAT
ATGTCTTGAGGTGATTTTAT

Downstream 100 bases:

>100_bases
AGGTGTTTTTTATATGTCTTCTCTTCTTGAAATCTCTTCCATGAGATTTTTAATTTATGACACTTTCTCACACTTATTCC
TTTATAATTACTATGAAGAA

Product: thiosulfate reductase electron transport protein PhsB

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSSITLNPKEGGIQKSLPFTPKKNYAIITDLNKCFGCAGCQMSCKEWNTSGMFGPLPDLNPYGELDVMFWLRVLYVEVGN
YPQTKVYNIPINCFHCMNAPCVPVCPVGATFKREEDGIVLVDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDRI
YDPTLPPEERIPACIHGCMVQARIWADRLDPTDPGNILFIDKGGFVLGPETGADPASGYLPWRSAYAADNDVELLSESEY
YNVWTSNGVVILGSQGNNSTYTEQNGNSTS

Sequences:

>Translated_270_residues
MSSITLNPKEGGIQKSLPFTPKKNYAIITDLNKCFGCAGCQMSCKEWNTSGMFGPLPDLNPYGELDVMFWLRVLYVEVGN
YPQTKVYNIPINCFHCMNAPCVPVCPVGATFKREEDGIVLVDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDRI
YDPTLPPEERIPACIHGCMVQARIWADRLDPTDPGNILFIDKGGFVLGPETGADPASGYLPWRSAYAADNDVELLSESEY
YNVWTSNGVVILGSQGNNSTYTEQNGNSTS
>Mature_269_residues
SSITLNPKEGGIQKSLPFTPKKNYAIITDLNKCFGCAGCQMSCKEWNTSGMFGPLPDLNPYGELDVMFWLRVLYVEVGNY
PQTKVYNIPINCFHCMNAPCVPVCPVGATFKREEDGIVLVDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDRIY
DPTLPPEERIPACIHGCMVQARIWADRLDPTDPGNILFIDKGGFVLGPETGADPASGYLPWRSAYAADNDVELLSESEYY
NVWTSNGVVILGSQGNNSTYTEQNGNSTS

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=201, Percent_Identity=30.3482587064677, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787122, Length=168, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787740, Length=82, Percent_Identity=45.1219512195122, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI226510944, Length=169, Percent_Identity=32.5443786982249, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787872, Length=163, Percent_Identity=31.2883435582822, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787478, Length=81, Percent_Identity=44.4444444444444, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790326, Length=161, Percent_Identity=29.8136645962733, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787749, Length=161, Percent_Identity=29.1925465838509, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789370, Length=179, Percent_Identity=28.4916201117318, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082180, Length=167, Percent_Identity=31.1377245508982, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082179, Length=160, Percent_Identity=30.625, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367245, Length=163, Percent_Identity=28.8343558282209, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30000; Mature: 29869

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSITLNPKEGGIQKSLPFTPKKNYAIITDLNKCFGCAGCQMSCKEWNTSGMFGPLPDLN
CCCEECCCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCCCHHHCCCCCCCCCCCCCC
PYGELDVMFWLRVLYVEVGNYPQTKVYNIPINCFHCMNAPCVPVCPVGATFKREEDGIVL
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCEECCCCCCCEECCCCEEE
VDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDRIYDPTLPPEERIPACIHGCMV
EECHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHH
QARIWADRLDPTDPGNILFIDKGGFVLGPETGADPASGYLPWRSAYAADNDVELLSESEY
HHHHHHHCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHCCCCCCHHEECCCCE
YNVWTSNGVVILGSQGNNSTYTEQNGNSTS
EEEEECCCEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSITLNPKEGGIQKSLPFTPKKNYAIITDLNKCFGCAGCQMSCKEWNTSGMFGPLPDLN
CCEECCCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCCCCCCHHHCCCCCCCCCCCCCC
PYGELDVMFWLRVLYVEVGNYPQTKVYNIPINCFHCMNAPCVPVCPVGATFKREEDGIVL
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCCEECCCCCCCEECCCCEEE
VDYNECIGTKYCIYACPYGNRFFDYVEGVTKKCTHCFDRIYDPTLPPEERIPACIHGCMV
EECHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHH
QARIWADRLDPTDPGNILFIDKGGFVLGPETGADPASGYLPWRSAYAADNDVELLSESEY
HHHHHHHCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCHHHCCCCCCHHEECCCCE
YNVWTSNGVVILGSQGNNSTYTEQNGNSTS
EEEEECCCEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]