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The map label for this gene is soxC [H]

Identifier: 15921970

GI number: 15921970

Start: 1664315

End: 1665799

Strand: Direct

Name: soxC [H]

Synonym: ST1667

Alternate gene names: 15921970

Gene position: 1664315-1665799 (Clockwise)

Preceding gene: 15921969

Following gene: 15921971

Centisome position: 61.76

GC content: 35.49

Gene sequence:

>1485_bases
ATGAGTGATAGAGTCTCAAATTGGTTTAAGGAAAGACTAGGACTAGATGATTTACCATTTTTCAGAACACCAGACTATAT
GTATAAGGTTAATTTCTGGCTAGGAGCTCTAGTAGCTTCAGCGTTTATCTACACAGTAATATCGGGTTTAATATTACTTC
TCTATTATAATCCAGATCAGGGTTACGAGTCTACACTATTTATCATAGATAAAGTTCCTTATGGATCTGTAGTCCTATAC
AGTCACTTGTATGGAGCTTATGCGATGATAATTTTAGCCTATGTTCATATGTTTAGAAATTACTTTGCTGGAGCATACAA
AAGACCAAGAGAGTTATTATGGATAATTGGAGTTATTATGTTTGCTTTGACATTAGGCACTTCCTTCCTTGGATATAGCT
TAATAGGTGATGCATTAGCAACTAGTGCTGTAGATGTAGGTTCTGGAATAGTTTCCTCAATTCCAGGGTTATCTGGGTTA
TTGCCAGTATTATTCGGAAATTACGATGCTGGTCAATACGGTAGAGTATTAGCGTTACATATAATTTTTGCTGCACTTAT
TGGAGTGTTATTTGCATTTCACTTCTTCTTAGCTGAGCATTACGGAATGATGCCTTCAAGAAAAGAAAAACCAAAAGCAC
CAGCAGTTTACACAAAAGAAGAGTGGATGAAATTTAACCCATGGTGGCCAAGGAATTTTGTTTACATGATATCATTAGTC
TTCCTAACTTGGGGCTTTATACTAGTTATTCCAAATGCGCTATCATATTTAAGTGGATTGCCACAACAACTAAACCCATT
CTTAAATCCAAAACCAGCTCCTCCACCAAATTCCCCAGCTGCTGCACACATAACAACTTATCCGCCATGGTTCTTCCTAT
TCCTATATAAGATGGCTGATTTTACTAACAACGTGTTATTGTTCCTACTGTTTAGCTCAATAATACCCCTAGTTTACCTA
ATAATTGTGCCATTCCTAGATAGAAGTGCAGAACTACATCCTCTAAAAAGGAAAGTATTCACTGGTATAGGAATACTGAT
GATTGTGTATTTAATTCAAAATACTATTTGGGGTGATCTAACTCCTGGTGTACCAATTCCATTTAGTCAACAAGTAATGG
CATTCTTACCGCCCGCAGTAATAGTTGCTATAGGAATGTATTTCTTACCATCACCTAAAACAGAAACAAATGATTCACCA
TCATTAACTCAATCTACAAAAATTACTAAAGTAAGCACACAAAACCTACCTAGTTTACCAATAAAAGCTGTAGGAAAAGT
GGAGGTCGCTTCTGAAACTAAGAAGAAATTTGCTGAAATTTTAATATCAATACTCTTCATTATGGCTGTAATATTAGCAG
CACAAATATGGACAATACCCTCTACTGGACCAGCATCTAATCTATTTGGTATCGACTTAGGGCTAATATTTATAATGTTA
GGGGAAGCAATATCCTTGTATCATTACGTAGTATATAAGAAATAA

Upstream 100 bases:

>100_bases
TTTCTTATTTAATTTTTGATAAATAGTAAAGTATCTCTGTCATTTCTTAAAAATCAGTCCAACGCTTAATCCTTTTTTAA
TATTTTTCTAATTTAATCAT

Downstream 100 bases:

>100_bases
AATATTTTTTATCACTTTTTCTCAAAGTTTAAATTGGGGGTGTTTTTGGTTGATTAGTGTTGGTTTTTATTATAGGGTTA
AGAGGGGTTTTGAGGGTGAG

Product: cytochrome b

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MSDRVSNWFKERLGLDDLPFFRTPDYMYKVNFWLGALVASAFIYTVISGLILLLYYNPDQGYESTLFIIDKVPYGSVVLY
SHLYGAYAMIILAYVHMFRNYFAGAYKRPRELLWIIGVIMFALTLGTSFLGYSLIGDALATSAVDVGSGIVSSIPGLSGL
LPVLFGNYDAGQYGRVLALHIIFAALIGVLFAFHFFLAEHYGMMPSRKEKPKAPAVYTKEEWMKFNPWWPRNFVYMISLV
FLTWGFILVIPNALSYLSGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKMADFTNNVLLFLLFSSIIPLVYL
IIVPFLDRSAELHPLKRKVFTGIGILMIVYLIQNTIWGDLTPGVPIPFSQQVMAFLPPAVIVAIGMYFLPSPKTETNDSP
SLTQSTKITKVSTQNLPSLPIKAVGKVEVASETKKKFAEILISILFIMAVILAAQIWTIPSTGPASNLFGIDLGLIFIML
GEAISLYHYVVYKK

Sequences:

>Translated_494_residues
MSDRVSNWFKERLGLDDLPFFRTPDYMYKVNFWLGALVASAFIYTVISGLILLLYYNPDQGYESTLFIIDKVPYGSVVLY
SHLYGAYAMIILAYVHMFRNYFAGAYKRPRELLWIIGVIMFALTLGTSFLGYSLIGDALATSAVDVGSGIVSSIPGLSGL
LPVLFGNYDAGQYGRVLALHIIFAALIGVLFAFHFFLAEHYGMMPSRKEKPKAPAVYTKEEWMKFNPWWPRNFVYMISLV
FLTWGFILVIPNALSYLSGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKMADFTNNVLLFLLFSSIIPLVYL
IIVPFLDRSAELHPLKRKVFTGIGILMIVYLIQNTIWGDLTPGVPIPFSQQVMAFLPPAVIVAIGMYFLPSPKTETNDSP
SLTQSTKITKVSTQNLPSLPIKAVGKVEVASETKKKFAEILISILFIMAVILAAQIWTIPSTGPASNLFGIDLGLIFIML
GEAISLYHYVVYKK
>Mature_493_residues
SDRVSNWFKERLGLDDLPFFRTPDYMYKVNFWLGALVASAFIYTVISGLILLLYYNPDQGYESTLFIIDKVPYGSVVLYS
HLYGAYAMIILAYVHMFRNYFAGAYKRPRELLWIIGVIMFALTLGTSFLGYSLIGDALATSAVDVGSGIVSSIPGLSGLL
PVLFGNYDAGQYGRVLALHIIFAALIGVLFAFHFFLAEHYGMMPSRKEKPKAPAVYTKEEWMKFNPWWPRNFVYMISLVF
LTWGFILVIPNALSYLSGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKMADFTNNVLLFLLFSSIIPLVYLI
IVPFLDRSAELHPLKRKVFTGIGILMIVYLIQNTIWGDLTPGVPIPFSQQVMAFLPPAVIVAIGMYFLPSPKTETNDSPS
LTQSTKITKVSTQNLPSLPIKAVGKVEVASETKKKFAEILISILFIMAVILAAQIWTIPSTGPASNLFGIDLGLIFIMLG
EAISLYHYVVYKK

Specific function: Binds 2 heme groups (b586 and b606) which are not covalently bound to the protein [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=173, Percent_Identity=27.1676300578035, Blast_Score=70, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6226529, Length=315, Percent_Identity=25.0793650793651, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6226532, Length=177, Percent_Identity=28.8135593220339, Blast_Score=70, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6226531, Length=130, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55297; Mature: 55166

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRVSNWFKERLGLDDLPFFRTPDYMYKVNFWLGALVASAFIYTVISGLILLLYYNPDQ
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
GYESTLFIIDKVPYGSVVLYSHLYGAYAMIILAYVHMFRNYFAGAYKRPRELLWIIGVIM
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
FALTLGTSFLGYSLIGDALATSAVDVGSGIVSSIPGLSGLLPVLFGNYDAGQYGRVLALH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
IIFAALIGVLFAFHFFLAEHYGMMPSRKEKPKAPAVYTKEEWMKFNPWWPRNFVYMISLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHCEECCCCCCHHHHHHHHHH
FLTWGFILVIPNALSYLSGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKMAD
HHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
FTNNVLLFLLFSSIIPLVYLIIVPFLDRSAELHPLKRKVFTGIGILMIVYLIQNTIWGDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TPGVPIPFSQQVMAFLPPAVIVAIGMYFLPSPKTETNDSPSLTQSTKITKVSTQNLPSLP
CCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
IKAVGKVEVASETKKKFAEILISILFIMAVILAAQIWTIPSTGPASNLFGIDLGLIFIML
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
GEAISLYHYVVYKK
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SDRVSNWFKERLGLDDLPFFRTPDYMYKVNFWLGALVASAFIYTVISGLILLLYYNPDQ
CCHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC
GYESTLFIIDKVPYGSVVLYSHLYGAYAMIILAYVHMFRNYFAGAYKRPRELLWIIGVIM
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
FALTLGTSFLGYSLIGDALATSAVDVGSGIVSSIPGLSGLLPVLFGNYDAGQYGRVLALH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHH
IIFAALIGVLFAFHFFLAEHYGMMPSRKEKPKAPAVYTKEEWMKFNPWWPRNFVYMISLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHCEECCCCCCHHHHHHHHHH
FLTWGFILVIPNALSYLSGLPQQLNPFLNPKPAPPPNSPAAAHITTYPPWFFLFLYKMAD
HHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
FTNNVLLFLLFSSIIPLVYLIIVPFLDRSAELHPLKRKVFTGIGILMIVYLIQNTIWGDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TPGVPIPFSQQVMAFLPPAVIVAIGMYFLPSPKTETNDSPSLTQSTKITKVSTQNLPSLP
CCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
IKAVGKVEVASETKKKFAEILISILFIMAVILAAQIWTIPSTGPASNLFGIDLGLIFIML
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
GEAISLYHYVVYKK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1372250 [H]