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The map label for this gene is yrkH [H]

Identifier: 15921932

GI number: 15921932

Start: 1625121

End: 1625861

Strand: Reverse

Name: yrkH [H]

Synonym: ST1629

Alternate gene names: 15921932

Gene position: 1625861-1625121 (Counterclockwise)

Preceding gene: 15921933

Following gene: 15921921

Centisome position: 60.33

GC content: 31.85

Gene sequence:

>741_bases
ATGATATTTAGACAAATTATAAGTCCTACAGGAGGATGTATAACGTACATTTTTGGCTGTAGTGAAGCTGGAGAACTTTT
TGTTATAGACCCTAAATATGAACATATTAATGAAATTATAAAATTGGCTGAAGATCTTGGAGATATGAAAATTGCATACA
TAATTGATACACATACTCATGCAGATCATATATCTGGAGCAAGAAAATTACAATCCCTTACTAATGCTAATGTATACTAC
CATGAGGAGTCTAAAGTTAGCTTTCAAGTTGAGAGACTTAAAGACGGTGAGGAAATAAAGGCTGGTAATGTCAAAATAAA
AATTATTCATACTCCTGGGCACACACCAGATAGCATCTCTATTTTAATTTATGATAGAAGAAGGGATGAAAGCTGGAGTG
AACCTTGGGCTGTATTAACTGGTGATACGCTTTTTGTAGGCACTGTAGGGAGAATCGATATAGGTGGTGAAGATTCAGCA
GAAAAACTGTACTATAGTCTAAGTAAGTTAAAAGAGCTACCAGATTATGTAGAAATTTACCCAGCACATACTTCTGGATC
TGTTTGTGGATATGGTATTAGTGGTAAACCAAGTTCTACAATAGGTTTTGAAAAGAAGTTTAATCAATTATTTAAAATAA
ATGATAAGAATGAATTTATAGGAAGAATTACTAGTATCTCTTTGAATAAACCTAAGCATTTTGATGAAAATATTAAAATA
AATATAATTGGAGTAGTATGA

Upstream 100 bases:

>100_bases
ACTCTTGTAAAGGGTGTGTTATTCAAGCTAAGGAACATTTTGAATTATTAACTTATAAAAGTGAATAAGTTTTTTATAAT
TTAGGTAGATATTGTAATTT

Downstream 100 bases:

>100_bases
GCAATTAAAGATTTTTATTATAAAAGATATAGAATTAAAAAGTTATTGAAATCAATTCATATAATAAGTTTATAGAATTT
TTTTATTATTTTATTTCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MIFRQIISPTGGCITYIFGCSEAGELFVIDPKYEHINEIIKLAEDLGDMKIAYIIDTHTHADHISGARKLQSLTNANVYY
HEESKVSFQVERLKDGEEIKAGNVKIKIIHTPGHTPDSISILIYDRRRDESWSEPWAVLTGDTLFVGTVGRIDIGGEDSA
EKLYYSLSKLKELPDYVEIYPAHTSGSVCGYGISGKPSSTIGFEKKFNQLFKINDKNEFIGRITSISLNKPKHFDENIKI
NIIGVV

Sequences:

>Translated_246_residues
MIFRQIISPTGGCITYIFGCSEAGELFVIDPKYEHINEIIKLAEDLGDMKIAYIIDTHTHADHISGARKLQSLTNANVYY
HEESKVSFQVERLKDGEEIKAGNVKIKIIHTPGHTPDSISILIYDRRRDESWSEPWAVLTGDTLFVGTVGRIDIGGEDSA
EKLYYSLSKLKELPDYVEIYPAHTSGSVCGYGISGKPSSTIGFEKKFNQLFKINDKNEFIGRITSISLNKPKHFDENIKI
NIIGVV
>Mature_246_residues
MIFRQIISPTGGCITYIFGCSEAGELFVIDPKYEHINEIIKLAEDLGDMKIAYIIDTHTHADHISGARKLQSLTNANVYY
HEESKVSFQVERLKDGEEIKAGNVKIKIIHTPGHTPDSISILIYDRRRDESWSEPWAVLTGDTLFVGTVGRIDIGGEDSA
EKLYYSLSKLKELPDYVEIYPAHTSGSVCGYGISGKPSSTIGFEKKFNQLFKINDKNEFIGRITSISLNKPKHFDENIKI
NIIGVV

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Homo sapiens, GI41327741, Length=246, Percent_Identity=28.0487804878049, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1787158, Length=213, Percent_Identity=25.8215962441315, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538952, Length=245, Percent_Identity=28.1632653061224, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI221330176, Length=242, Percent_Identity=30.1652892561983, Blast_Score=99, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 27570; Mature: 27570

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFRQIISPTGGCITYIFGCSEAGELFVIDPKYEHINEIIKLAEDLGDMKIAYIIDTHTH
CCCHHHCCCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCC
ADHISGARKLQSLTNANVYYHEESKVSFQVERLKDGEEIKAGNVKIKIIHTPGHTPDSIS
HHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCCCEEEECCEEEEEEECCCCCCCEEE
ILIYDRRRDESWSEPWAVLTGDTLFVGTVGRIDIGGEDSAEKLYYSLSKLKELPDYVEIY
EEEEECCCCCCCCCCEEEEECCEEEEEECEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
PAHTSGSVCGYGISGKPSSTIGFEKKFNQLFKINDKNEFIGRITSISLNKPKHFDENIKI
ECCCCCCEEEECCCCCCCCCCCHHHHHHHHEEECCCHHHEEEEEEEECCCCCCCCCCEEE
NIIGVV
EEEEEC
>Mature Secondary Structure
MIFRQIISPTGGCITYIFGCSEAGELFVIDPKYEHINEIIKLAEDLGDMKIAYIIDTHTH
CCCHHHCCCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCC
ADHISGARKLQSLTNANVYYHEESKVSFQVERLKDGEEIKAGNVKIKIIHTPGHTPDSIS
HHHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCCCEEEECCEEEEEEECCCCCCCEEE
ILIYDRRRDESWSEPWAVLTGDTLFVGTVGRIDIGGEDSAEKLYYSLSKLKELPDYVEIY
EEEEECCCCCCCCCCEEEEECCEEEEEECEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
PAHTSGSVCGYGISGKPSSTIGFEKKFNQLFKINDKNEFIGRITSISLNKPKHFDENIKI
ECCCCCCEEEECCCCCCCCCCCHHHHHHHHEEECCCHHHEEEEEEEECCCCCCCCCCEEE
NIIGVV
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]