Click here to switch to the map view.

The map label for this gene is rpl12p [H]

Identifier: 15921649

GI number: 15921649

Start: 1374081

End: 1374407

Strand: Reverse

Name: rpl12p [H]

Synonym: ST1365

Alternate gene names: 15921649

Gene position: 1374407-1374081 (Counterclockwise)

Preceding gene: 15921650

Following gene: 15921648

Centisome position: 51.0

GC content: 39.14

Gene sequence:

>327_bases
GTGATAGATATGGAATATATATATGCTAGTTTACTCTTACACTCAGCCAAAAAAGAAATAAACGAAGAAAACCTAAAAAA
TGTATTAACAGCTGCAGGTATAACAGTAGATGAGGTAAGACTAAAGGCTGTAGTCGCAGCATTAAAAGAAGTAAATATAG
ATGAGGTATTAAAGAATGCTACTGCAATGCCAGTAGCAGTAGCTGCAGCACCAGCAGCGGCACCAGCTCAACAAGCTGAG
AAGAAAGAGGAGAAGAAAGAAGAGGAAGAAAAGAAAGGACCAAGCGAAGAAGAAATAGGTGGAGGACTAGCTTCCCTCTT
TGGTTAA

Upstream 100 bases:

>100_bases
AAGAGGAAGAAAAGAAAGGACCAAGCGAAGAAGAAATAGGTGGAGGACTATCCTCATTATTCGGAGGATGAATTTATATA
TTAGTTAATACCTTTATGGT

Downstream 100 bases:

>100_bases
AAATCTTTTTTAATACAAACTCTTTTAATCTGCTTCTTAATTACTTAGATTATGGTTCAAGTTAATGAAAATGAGTATCG
TTTGAAATTCTTTTTAAATA

Product: 50S ribosomal protein L12P

Products: NA

Alternate protein names: Ribosomal protein 'A' [H]

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MIDMEYIYASLLLHSAKKEINEENLKNVLTAAGITVDEVRLKAVVAALKEVNIDEVLKNATAMPVAVAAAPAAAPAQQAE
KKEEKKEEEEKKGPSEEEIGGGLASLFG

Sequences:

>Translated_108_residues
MIDMEYIYASLLLHSAKKEINEENLKNVLTAAGITVDEVRLKAVVAALKEVNIDEVLKNATAMPVAVAAAPAAAPAQQAE
KKEEKKEEEEKKGPSEEEIGGGLASLFG
>Mature_108_residues
MIDMEYIYASLLLHSAKKEINEENLKNVLTAAGITVDEVRLKAVVAALKEVNIDEVLKNATAMPVAVAAAPAAAPAQQAE
KKEEKKEEEEKKGPSEEEIGGGLASLFG

Specific function: Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation [H]

COG id: COG2058

COG function: function code J; Ribosomal protein L12E/L44/L45/RPP1/RPP2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L12P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001813
- InterPro:   IPR022295 [H]

Pfam domain/function: PF00428 Ribosomal_60s [H]

EC number: NA

Molecular weight: Translated: 11519; Mature: 11519

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDMEYIYASLLLHSAKKEINEENLKNVLTAAGITVDEVRLKAVVAALKEVNIDEVLKNA
CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHCC
TAMPVAVAAAPAAAPAQQAEKKEEKKEEEEKKGPSEEEIGGGLASLFG
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHCC
>Mature Secondary Structure
MIDMEYIYASLLLHSAKKEINEENLKNVLTAAGITVDEVRLKAVVAALKEVNIDEVLKNA
CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHCC
TAMPVAVAAAPAAAPAQQAEKKEEKKEEEEKKGPSEEEIGGGLASLFG
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7966335; 2497941 [H]