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The map label for this gene is rpl13e

Identifier: 15920938

GI number: 15920938

Start: 694884

End: 695117

Strand: Direct

Name: rpl13e

Synonym: STS087

Alternate gene names: 15920938

Gene position: 694884-695117 (Clockwise)

Preceding gene: 15920935

Following gene: 15920941

Centisome position: 25.79

GC content: 31.62

Gene sequence:

>234_bases
ATGGTAGAGCCGATAGTTAAACGCCCTCATTATCGTTTTGAGATTAGAAAGAAAGATACTAAAATAGGTAAAGGTTTTAG
TTTAAAAGAATTAAAAGAATCCGGTTTCTCCGTACAAGAGGCTAAAAAACTTAGAGTCAGAATTGACAAAAGAAGAAAAA
CTTCTTATCCAGAAAATGTTGAAGTCCTAAAGAAATTAAAGGAACAACTACAACAGAAGAAACAAGCTCAATAA

Upstream 100 bases:

>100_bases
TACGTTAGTATATGTCTTCTGCATTAATTGTAAATTAGGGTAATATTTAAAAGGTTTTCGTTAAGTATAGCTTATTATCT
CTTACATAAACTTTTTATTT

Downstream 100 bases:

>100_bases
TTTTCATTAATGAAATCAGTAAAGTAAATAATCTGAATTTGTTCTACTACTTTGTTAATTCATAAGTTTTTTGCGATTTC
TATTTGTATAATAAGTGGAG

Product: 50S ribosomal protein L13e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
MVEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVEVLKKLKEQLQQKKQAQ

Sequences:

>Translated_77_residues
MVEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVEVLKKLKEQLQQKKQAQ
>Mature_77_residues
MVEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVEVLKKLKEQLQQKKQAQ

Specific function: Unknown

COG id: COG4352

COG function: function code J; Ribosomal protein L13E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L13e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL13E_SULTO (P58469)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376607.1
- GeneID:   1458666
- GenomeReviews:   BA000023_GR
- KEGG:   sto:STS087
- NMPDR:   fig|273063.1.peg.775
- HOGENOM:   HBG513236
- OMA:   YKRIGRG
- ProtClustDB:   PRK12277
- BioCyc:   STOK273063:STS087-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00499
- InterPro:   IPR001380
- InterPro:   IPR023004
- InterPro:   IPR018256
- PANTHER:   PTHR11722

Pfam domain/function: PF01294 Ribosomal_L13e

EC number: NA

Molecular weight: Translated: 9226; Mature: 9226

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS01104 RIBOSOMAL_L13E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENV
CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
EVLKKLKEQLQQKKQAQ
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENV
CCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH
EVLKKLKEQLQQKKQAQ
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479