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The map label for this gene is yhdW [H]

Identifier: 15920891

GI number: 15920891

Start: 652354

End: 653034

Strand: Direct

Name: yhdW [H]

Synonym: ST0669

Alternate gene names: 15920891

Gene position: 652354-653034 (Clockwise)

Preceding gene: 15920889

Following gene: 15920892

Centisome position: 24.21

GC content: 32.45

Gene sequence:

>681_bases
ATGATCTGCATAGGACATAGAGGAGCATCAGCTTATGAGCCAGAGAATACTATAAGGGCTTTTAAACGAGCTATTGAAAT
GGGTTGTGAAGGAATAGAAATGGATCTAAGAAGGACAAAAGATGGAAAGATAATTGTTATTCATGATGAAACTGTGGATA
GAACTACAAACGGTAAAGGAAAAGTGAGTGAAATGACTATAGACGAGATTAAGAAACTTGACTCTCACGGAGAAAAAATA
CCTTTACTTTCTGAAGTATTAAGTGAGGTAAAAGCAGATCTTTATTTATTAGAAATAAAAGAAAGCGGGTATGAGGAACA
GATTGTGAATGAGGTAAAAGGTTTCAATATATTAGATTCCGTTATATTCATTTCGTTTAATTATGATTCGTTAAAGAAAA
TTAAGGAAAGCGGAGGAAAAAGGATAGGACTAATTTATTCTTCCCTTCCATCGCCGATAAAGATTGCTAAGAGTATTAAA
GCTTATGCTATGTTGCCTAAATATAATCTATTGAATAGAACAGAAGTTCATGAACTGAAAAGAAATAAGTTCTTCCTAAT
ACCATGGGTAGTTAATGACGTTAGTATTTTGGAAAAGATGGTTTACTATGGTGTTGATGCAATAGCTACAGATAAACCAG
ATATTATGAAACAACTAAAAATCATTCTTTCCAAAAAGTGA

Upstream 100 bases:

>100_bases
TGCTCAAAGTCCCTTCTGTCGTCGATAAAAATTTTATCAACTTTTTATCCATTGGTTTAGTAGAGGAAGAAATAAATTTT
AACTTTATTTACATTTTCAT

Downstream 100 bases:

>100_bases
AGATAGATTAAATATTTAAATGTAAAGGGGAAATTTATCCAGTGGGGCTTTTTAGAAGAAAAGCTGAACCTCAAGTTGAC
AAAAAACAAATGATAAAAAT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MICIGHRGASAYEPENTIRAFKRAIEMGCEGIEMDLRRTKDGKIIVIHDETVDRTTNGKGKVSEMTIDEIKKLDSHGEKI
PLLSEVLSEVKADLYLLEIKESGYEEQIVNEVKGFNILDSVIFISFNYDSLKKIKESGGKRIGLIYSSLPSPIKIAKSIK
AYAMLPKYNLLNRTEVHELKRNKFFLIPWVVNDVSILEKMVYYGVDAIATDKPDIMKQLKIILSKK

Sequences:

>Translated_226_residues
MICIGHRGASAYEPENTIRAFKRAIEMGCEGIEMDLRRTKDGKIIVIHDETVDRTTNGKGKVSEMTIDEIKKLDSHGEKI
PLLSEVLSEVKADLYLLEIKESGYEEQIVNEVKGFNILDSVIFISFNYDSLKKIKESGGKRIGLIYSSLPSPIKIAKSIK
AYAMLPKYNLLNRTEVHELKRNKFFLIPWVVNDVSILEKMVYYGVDAIATDKPDIMKQLKIILSKK
>Mature_226_residues
MICIGHRGASAYEPENTIRAFKRAIEMGCEGIEMDLRRTKDGKIIVIHDETVDRTTNGKGKVSEMTIDEIKKLDSHGEKI
PLLSEVLSEVKADLYLLEIKESGYEEQIVNEVKGFNILDSVIFISFNYDSLKKIKESGGKRIGLIYSSLPSPIKIAKSIK
AYAMLPKYNLLNRTEVHELKRNKFFLIPWVVNDVSILEKMVYYGVDAIATDKPDIMKQLKIILSKK

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=97, Percent_Identity=41.2371134020619, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1789858, Length=231, Percent_Identity=23.8095238095238, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788572, Length=245, Percent_Identity=27.3469387755102, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17542344, Length=242, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561436, Length=132, Percent_Identity=34.8484848484849, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 25668; Mature: 25668

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICIGHRGASAYEPENTIRAFKRAIEMGCEGIEMDLRRTKDGKIIVIHDETVDRTTNGKG
CEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHEECCCCCEEEEECCCCCCCCCCCC
KVSEMTIDEIKKLDSHGEKIPLLSEVLSEVKADLYLLEIKESGYEEQIVNEVKGFNILDS
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHCCCCHHHE
VIFISFNYDSLKKIKESGGKRIGLIYSSLPSPIKIAKSIKAYAMLPKYNLLNRTEVHELK
EEEEEECHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RNKFFLIPWVVNDVSILEKMVYYGVDAIATDKPDIMKQLKIILSKK
CCCEEEEEHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MICIGHRGASAYEPENTIRAFKRAIEMGCEGIEMDLRRTKDGKIIVIHDETVDRTTNGKG
CEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHEECCCCCEEEEECCCCCCCCCCCC
KVSEMTIDEIKKLDSHGEKIPLLSEVLSEVKADLYLLEIKESGYEEQIVNEVKGFNILDS
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHCCCCHHHE
VIFISFNYDSLKKIKESGGKRIGLIYSSLPSPIKIAKSIKAYAMLPKYNLLNRTEVHELK
EEEEEECHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RNKFFLIPWVVNDVSILEKMVYYGVDAIATDKPDIMKQLKIILSKK
CCCEEEEEHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]