Click here to switch to the map view.

The map label for this gene is 15920735

Identifier: 15920735

GI number: 15920735

Start: 514018

End: 514737

Strand: Direct

Name: 15920735

Synonym: ST0518

Alternate gene names: NA

Gene position: 514018-514737 (Clockwise)

Preceding gene: 15920734

Following gene: 15920736

Centisome position: 19.07

GC content: 30.42

Gene sequence:

>720_bases
GTGAGAATTATGGCACGAAAATTTTGCGTTTTATGTGGTAGAGAGGAAGGGGAATTTATTGGCTCTTTATGCGTTGATTG
TTATATAAAAACTAAAGAAATCGTAAGTTTGCCACAGAGTATAAAAGGTAAGTATTGTAAATTATGTGGAGCTGAATGGG
TAAATGGCAAGTGGATACGAAGTAAGGATAAAACTCTAACACCCGTAGAATCTATAATATATAGAGAAATTGGGAAAAAG
ATAGAAGTAGATCCTAATGTAGAAGAGATAAGCTATCATATCGAAAATATCTGGAAAGACGTTAATGGACATACTTTTGT
AACGCTTAATATTGAAGGCAAAATAAGAGGAAAACCTTTCACTTTAACTAAAGTTGTTGATTTAAACATAGAAAGAACTT
TATGTACATCTTGTATAAGAAAGAAATCAAGATATTATGAGGCTATTATACAACTAAGATTTAAAGAGGGAAAATTTGAC
GCTAAAAAGCGAACAGTCTTTGAGTCTTTCTTTACTGATGATATTATAGATAGCTTATCCGATGTGGTTGAGGGAAAAGA
AGGAGTAGATTATTATTTCATCAATAAAACAGTAGCAAAAAAGCTAGTTTCTAATTTTACTTCAATGGTAAAAGACGTAA
AAATTATGGAAAGTTATCAAGATGAAACAATCAGAAACGGTAAAAAATTTGCTAAATTAGTTATATCAGTTAGAGTATGA

Upstream 100 bases:

>100_bases
TAGGAAATAAAATAATAGAAGAAGCAGTAAAAAGAGGTTTTTTAAAAGAAGAGGGAGTAATCTCTATACAAGGAGTTAAG
TTTGCACAAATATATAATAT

Downstream 100 bases:

>100_bases
TAGTAGTTGGAATTGATGAAGCTGGTAGAGGATCATTAATTGGTCCGATGATTGTTGCTGGAGTTGCTATTAAGAATGAT
AGGTTAAAGTTTTTAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NMD Protein Affecting Ribosome Stability And MRNA Decay; NMD3 Family Protein; Nmd3 Family Protein; Nonsense MRNA Decay Protein; Nonsense Mediated MRNA Decay

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MRIMARKFCVLCGREEGEFIGSLCVDCYIKTKEIVSLPQSIKGKYCKLCGAEWVNGKWIRSKDKTLTPVESIIYREIGKK
IEVDPNVEEISYHIENIWKDVNGHTFVTLNIEGKIRGKPFTLTKVVDLNIERTLCTSCIRKKSRYYEAIIQLRFKEGKFD
AKKRTVFESFFTDDIIDSLSDVVEGKEGVDYYFINKTVAKKLVSNFTSMVKDVKIMESYQDETIRNGKKFAKLVISVRV

Sequences:

>Translated_239_residues
MRIMARKFCVLCGREEGEFIGSLCVDCYIKTKEIVSLPQSIKGKYCKLCGAEWVNGKWIRSKDKTLTPVESIIYREIGKK
IEVDPNVEEISYHIENIWKDVNGHTFVTLNIEGKIRGKPFTLTKVVDLNIERTLCTSCIRKKSRYYEAIIQLRFKEGKFD
AKKRTVFESFFTDDIIDSLSDVVEGKEGVDYYFINKTVAKKLVSNFTSMVKDVKIMESYQDETIRNGKKFAKLVISVRV
>Mature_239_residues
MRIMARKFCVLCGREEGEFIGSLCVDCYIKTKEIVSLPQSIKGKYCKLCGAEWVNGKWIRSKDKTLTPVESIIYREIGKK
IEVDPNVEEISYHIENIWKDVNGHTFVTLNIEGKIRGKPFTLTKVVDLNIERTLCTSCIRKKSRYYEAIIQLRFKEGKFD
AKKRTVFESFFTDDIIDSLSDVVEGKEGVDYYFINKTVAKKLVSNFTSMVKDVKIMESYQDETIRNGKKFAKLVISVRV

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27618; Mature: 27618

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMARKFCVLCGREEGEFIGSLCVDCYIKTKEIVSLPQSIKGKYCKLCGAEWVNGKWIR
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCEEE
SKDKTLTPVESIIYREIGKKIEVDPNVEEISYHIENIWKDVNGHTFVTLNIEGKIRGKPF
CCCCCCCHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCE
TLTKVVDLNIERTLCTSCIRKKSRYYEAIIQLRFKEGKFDAKKRTVFESFFTDDIIDSLS
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
DVVEGKEGVDYYFINKTVAKKLVSNFTSMVKDVKIMESYQDETIRNGKKFAKLVISVRV
HHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEECC
>Mature Secondary Structure
MRIMARKFCVLCGREEGEFIGSLCVDCYIKTKEIVSLPQSIKGKYCKLCGAEWVNGKWIR
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCEEE
SKDKTLTPVESIIYREIGKKIEVDPNVEEISYHIENIWKDVNGHTFVTLNIEGKIRGKPF
CCCCCCCHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCE
TLTKVVDLNIERTLCTSCIRKKSRYYEAIIQLRFKEGKFDAKKRTVFESFFTDDIIDSLS
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
DVVEGKEGVDYYFINKTVAKKLVSNFTSMVKDVKIMESYQDETIRNGKKFAKLVISVRV
HHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA