Click here to switch to the map view.

The map label for this gene is rpl3p

Identifier: 15920641

GI number: 15920641

Start: 435152

End: 436183

Strand: Reverse

Name: rpl3p

Synonym: ST0429

Alternate gene names: 15920641

Gene position: 436183-435152 (Counterclockwise)

Preceding gene: 15920642

Following gene: 15920640

Centisome position: 16.19

GC content: 35.76

Gene sequence:

>1032_bases
ATGGGTCATCGTAAGCTTGCTTCGCCAAGGAGAGGTTCCGCAGGTGTACGACCAAGAAAGAGAGCTAGCGAAATTTTGCC
TACGCCTAGAAGCTGGCCTACTATACAATCTAATGAACCTAAATTGTTAGGCTTTGTAGGTTACAAAGTTGGCATGAGTC
ATATTTTTATGATTGACGATAAGCCTACTTCTCCTAATTATGGAAAAGAAATTTATGTTCCAGTTAGTGTTATAGAGACA
CCCCCAGTCATTCCATTAGCTATTAGAGCCTATGTAATGGGGCCTAAGGGCGAACCTACAACATTAACTGAATATTGGGG
AGATATCAGTGAAGATCTTTTAAAATTAATCCAACAAAGAAAAGTAACTAGATTAAAAATAGATAAAGAAAAGATGAAAG
GAAAATTAGATGAAATAAATAATAAGTTAAATGATATACTGTATTTAAGAGTCCTTATAGCGACACAACCTAAATTGGTC
CCTTCATTAGGTAAAAAGAAACCAGAAATAGTCGAAGTACAAGTAGGAGGAGGAGATATAAAATCACAATTAAATTACGT
TTTAAATATTCTTGGCAAACCTCTAAGTGTTAAAGATGTGTTTAAGGAAGGCCAACTAATTGACATTATTGGTGTTACTA
AGGGAAAAGGATTTCAAGGCGTAGTAAAAAGATATGGAGTTGTAGAGCTACCTAGATGGCATAAGCACAGAAAAGGTAGC
AGAAAAGTAGGAGCTAGGGGCCCTTCATTCTCCACACCAAGCTATGTGCCACAACCAGGTCAAATGGGATACCATAGAAG
AACAGAATATAATAAGAGAATTCTAAAAATTTCTGATGATCCAAATGAAATTAATCCTAAAGGAGGGTTTGTGAATTATG
GTATTGTTAGAAATACATATTTAATTATAGAGGGTTCAATAATTGGGGCAAAGAAAAGGCCACTATTCCTCAGATATCCT
ATAAGACCTAGTTGGATACCTCAGTCTGCACCTAAGATAACATACGTTAATTTATATAGTCAGCAAGGGTGA

Upstream 100 bases:

>100_bases
AAGAAGCTCTTATTTCATCTCTTTCGATACTTAATTTCATCTTAGGATAGATACATTTTTATACGGAGATTTTTAAAAAT
GAGAGAACGAGGGAAAATTA

Downstream 100 bases:

>100_bases
AATATATGTATTTAGAGCTTCAAATTAAAAAAACTCATATTTTTGATCTAAAAGGAAATAAAGTAGAAGAAATAGAATTA
CCTATTTTCTTTAGTTATCC

Product: 50S ribosomal protein L3P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEPKLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIET
PPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQRKVTRLKIDKEKMKGKLDEINNKLNDILYLRVLIATQPKLV
PSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGS
RKVGARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNEINPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYP
IRPSWIPQSAPKITYVNLYSQQG

Sequences:

>Translated_343_residues
MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEPKLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIET
PPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQRKVTRLKIDKEKMKGKLDEINNKLNDILYLRVLIATQPKLV
PSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGS
RKVGARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNEINPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYP
IRPSWIPQSAPKITYVNLYSQQG
>Mature_342_residues
GHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEPKLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETP
PVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQRKVTRLKIDKEKMKGKLDEINNKLNDILYLRVLIATQPKLVP
SLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSR
KVGARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNEINPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI
RPSWIPQSAPKITYVNLYSQQG

Specific function: One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit

COG id: COG0087

COG function: function code J; Ribosomal protein L3

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L3P family

Homologues:

Organism=Homo sapiens, GI4506649, Length=352, Percent_Identity=36.6477272727273, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI76496472, Length=345, Percent_Identity=33.9130434782609, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI4826988, Length=352, Percent_Identity=31.5340909090909, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI71984538, Length=353, Percent_Identity=34.5609065155807, Blast_Score=174, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI71984544, Length=339, Percent_Identity=32.1533923303835, Blast_Score=135, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI71984550, Length=193, Percent_Identity=36.7875647668394, Blast_Score=110, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6324637, Length=344, Percent_Identity=34.3023255813954, Blast_Score=155, Evalue=7e-39,
Organism=Drosophila melanogaster, GI17737907, Length=352, Percent_Identity=34.0909090909091, Blast_Score=180, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24645877, Length=335, Percent_Identity=33.4328358208955, Blast_Score=162, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24645879, Length=335, Percent_Identity=33.4328358208955, Blast_Score=162, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24645875, Length=114, Percent_Identity=34.2105263157895, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL3_SULTO (Q975I1)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376310.1
- ProteinModelPortal:   Q975I1
- SMR:   Q975I1
- GeneID:   1458366
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0429
- NMPDR:   fig|273063.1.peg.478
- HOGENOM:   HBG297464
- OMA:   KEDYLMI
- ProtClustDB:   PRK04231
- BioCyc:   STOK273063:ST0429-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01325_A
- InterPro:   IPR000597
- InterPro:   IPR019928
- InterPro:   IPR019926
- InterPro:   IPR009000
- TIGRFAMs:   TIGR03626

Pfam domain/function: PF00297 Ribosomal_L3; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 38585; Mature: 38454

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS00474 RIBOSOMAL_L3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEPKLLGFVGYKVGMSHIFMIDD
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHEECCEEEEEEEC
KPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR
CCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHC
KVTRLKIDKEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDI
CHHEEEECHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECCCHH
KSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGS
HHHHHHHHHHHCCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHCCCEECCCHHHHCCCC
RKVGARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNEINPKGGFVNYGIVRNTY
CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEE
LIIEGSIIGAKKRPLFLRYPIRPSWIPQSAPKITYVNLYSQQG
EEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
GHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEPKLLGFVGYKVGMSHIFMIDD
CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHEECCEEEEEEEC
KPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR
CCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHC
KVTRLKIDKEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDI
CHHEEEECHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECCCHH
KSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGS
HHHHHHHHHHHCCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHCCCEECCCHHHHCCCC
RKVGARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNEINPKGGFVNYGIVRNTY
CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEE
LIIEGSIIGAKKRPLFLRYPIRPSWIPQSAPKITYVNLYSQQG
EEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479