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The map label for this gene is rpl4lp [H]

Identifier: 15920640

GI number: 15920640

Start: 434346

End: 435155

Strand: Reverse

Name: rpl4lp [H]

Synonym: ST0428

Alternate gene names: 15920640

Gene position: 435155-434346 (Counterclockwise)

Preceding gene: 15920641

Following gene: 15920639

Centisome position: 16.15

GC content: 33.33

Gene sequence:

>810_bases
GTGAAATATATGTATTTAGAGCTTCAAATTAAAAAAACTCATATTTTTGATCTAAAAGGAAATAAAGTAGAAGAAATAGA
ATTACCTATTTTCTTTAGTTATCCTGTTAGGAAAGATCTAATTAGAAGGGTATTCATTTCAGAATTCACAAAGGCTCTAC
AACCAAAAGGAAGAGATCCTATGGCTGGTAAAAGAACTTCAGCTTTAAGCTTTGGTATTAATTTAGGTTTAGCAAGAGTC
CCTAGAGTAAAGACAACTGGTGAAGCAGCTTTAGCACCAAATACTGTGGGAGGAAGACTAGCTTTTCCACCAACGGTTGA
AAAGAAATTAGTAGAAGAGGTAAATAAGAAAGAAAAGAAACTAGCAATTATAAGTGCATTAAGTGCTACTGCTAATATGA
ACTTTGTAAAGAATAGAGGTCATGTATTTTCAATTGATACTCTTCCCATAATTGTAGTTGACGATATTACAAAGCTAACT
AAAACTAAGGAAATAATTGAGGTATTAGAATCTTTAAAAGTCTATGAAGATGTGGAGAGGGTTAAGGATAGAATTAGAAT
TAGATCTGGTAAAGGTAAGATGAGAGGAAGAAGATATAAGGAGCCTAAAGGACCGTTATTTGTAATTCATGAGAATAATC
CTGTATTTGTCAAGGCCGCAAGCAATATCCCCGGAGTTGATGTAATATTAGCGAGTGATTTAAGTGTAATACATCTTGCA
CCTGGAGGGCATCCAGGTAGATTAACAATTTATACTAAATCTTCTATTGATGTATTACGTAAAAGGTTTGAGGGGAGGTT
AGCATTATGA

Upstream 100 bases:

>100_bases
CAAAGAAAAGGCCACTATTCCTCAGATATCCTATAAGACCTAGTTGGATACCTCAGTCTGCACCTAAGATAACATACGTT
AATTTATATAGTCAGCAAGG

Downstream 100 bases:

>100_bases
TAATAAAAGAATTTCTTACTACAGAAAAAGCAATAAAACTTATTGAAAGTCAAAATACGTTAACAGTTATTGTAAATAAA
GAAGCAACAAAAGCTGATAT

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKYMYLELQIKKTHIFDLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARV
PRVKTTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGHVFSIDTLPIIVVDDITKLT
KTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLA
PGGHPGRLTIYTKSSIDVLRKRFEGRLAL

Sequences:

>Translated_269_residues
MKYMYLELQIKKTHIFDLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARV
PRVKTTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGHVFSIDTLPIIVVDDITKLT
KTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLA
PGGHPGRLTIYTKSSIDVLRKRFEGRLAL
>Mature_269_residues
MKYMYLELQIKKTHIFDLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARV
PRVKTTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGHVFSIDTLPIIVVDDITKLT
KTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLA
PGGHPGRLTIYTKSSIDVLRKRFEGRLAL

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=252, Percent_Identity=35.3174603174603, Blast_Score=141, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI17508669, Length=254, Percent_Identity=34.6456692913386, Blast_Score=144, Evalue=5e-35,
Organism=Saccharomyces cerevisiae, GI6320215, Length=240, Percent_Identity=36.6666666666667, Blast_Score=132, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6319505, Length=240, Percent_Identity=36.6666666666667, Blast_Score=132, Evalue=4e-32,
Organism=Drosophila melanogaster, GI24650747, Length=248, Percent_Identity=33.4677419354839, Blast_Score=140, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 30184; Mature: 30184

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYMYLELQIKKTHIFDLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDP
CEEEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
MAGKRTSALSFGINLGLARVPRVKTTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKK
CCCCCCCEEEECCCCCHHCCCCCCCCCCCEECCCCCCCEEECCCHHHHHHHHHHHHHHHH
LAIISALSATANMNFVKNRGHVFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVER
HHHHHHHHHHCCCEEEECCCCEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLA
HHHHHEEECCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCEEEEEC
PGGHPGRLTIYTKSSIDVLRKRFEGRLAL
CCCCCCEEEEEECCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKYMYLELQIKKTHIFDLKGNKVEEIELPIFFSYPVRKDLIRRVFISEFTKALQPKGRDP
CEEEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
MAGKRTSALSFGINLGLARVPRVKTTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKK
CCCCCCCEEEECCCCCHHCCCCCCCCCCCEECCCCCCCEEECCCHHHHHHHHHHHHHHHH
LAIISALSATANMNFVKNRGHVFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVER
HHHHHHHHHHCCCEEEECCCCEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VKDRIRIRSGKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLA
HHHHHEEECCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCEEEEEC
PGGHPGRLTIYTKSSIDVLRKRFEGRLAL
CCCCCCEEEEEECCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479 [H]